Gene family  

Sub-families
ORTHO002856 (31 genes in 17 species)
ORTHO003925 (28 genes in 19 species)
ORTHO011349 (17 genes in 17 species)
View all sub-families (19)
 
Keywords


Overview of gene family content




aly
Arabidopsis lyrata (2 genes)
ath
Arabidopsis thaliana (10 genes)
bdi
Brachypodium distachyon (21 genes)
cpa
Carica papaya (6 genes)
fve
Fragaria vesca (4 genes)
gma
Glycine max (19 genes)
lja
Lotus japonicus (7 genes)
mdo
Malus domestica (16 genes)
mes
Manihot esculenta (6 genes)
mtr
Medicago truncatula (5 genes)
osa
Oryza sativa ssp. japonica (14 genes)
osaindica
Oryza sativa ssp. indica (16 genes)
ppa
Physcomitrella patens (1 gene)
ptr
Populus trichocarpa (13 genes)
rco
Ricinus communis (7 genes)
sbi
Sorghum bicolor (17 genes)
smo
Selaginella moellendorffii (3 genes)
tca
Theobroma cacao (5 genes)
vvi
Vitis vinifera (5 genes)
zma
Zea mays (21 genes)



The gene family HOM000493 has 198 genes in 20 species (19 outlier genes).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
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Index of genes with 1 constraints:

Page 1 of 10, showing 20 records out of 198 total, starting on record 1, ending on 20

gene_id species description comment strand chr outlier
AL4G07070 aly name=scaffold_400728.1;pid=901227;prot=eq;tid=932740 - scaffold_4 Yes
AL5G08470 aly name=scaffold_500889.1;pid=905185;prot=eq;tid=936698 + scaffold_5 No
AT1G14590 ath Nucleotide-diphospho-sugar transferase family protein; CONTAINS InterPro DOMAIN/s: Nucleotide-diphospho-sugar transferase, predicted (InterPro:IPR005069); BEST Arabidopsis thaliana protein match is: Nucleotide-diphospho-sugar transferase family protein (TAIR:AT2G02061.1); Has 314 Blast hits to 308 proteins in 24 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 294; Viruses - 0; Other Eukaryotes - 20 (source: NCBI BLink).;Nucleotide-diphospho-sugar transferase family protein transcript=eq;prot=eq; - 1 No
AT1G28695 ath Nucleotide-diphospho-sugar transferase family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Nucleotide-diphospho-sugar transferase, predicted (InterPro:IPR005069); BEST Arabidopsis thaliana protein match is: Nucleotide-diphospho-sugar transferase family protein (TAIR:AT1G28710.3); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).;Nucleotide-diphospho-sugar transferase family protein transcript=eq;prot=eq; - 1 No
AT1G28700 ath Nucleotide-diphospho-sugar transferase family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Nucleotide-diphospho-sugar transferase, predicted (InterPro:IPR005069); BEST Arabidopsis thaliana protein match is: Nucleotide-diphospho-sugar transferase family protein (TAIR:AT1G28710.3); Has 309 Blast hits to 303 proteins in 27 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 288; Viruses - 0; Other Eukaryotes - 21 (source: NCBI BLink).;Nucleotide-diphospho-sugar transferase family protein transcript=eq;prot=eq; - 1 No
AT1G28710 ath Nucleotide-diphospho-sugar transferase family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Nucleotide-diphospho-sugar transferase, predicted (InterPro:IPR005069); BEST Arabidopsis thaliana protein match is: Nucleotide-diphospho-sugar transferase family protein (TAIR:AT1G28700.1); Has 346 Blast hits to 340 proteins in 27 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 321; Viruses - 0; Other Eukaryotes - 25 (source: NCBI BLink).;Nucleotide-diphospho-sugar transferase family protein transcript=eq;prot=eq; - 1 No
AT2G02061 ath Nucleotide-diphospho-sugar transferase family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: shoot apex, stem, flower, seed; EXPRESSED DURING: F mature embryo stage, petal differentiation and expansion stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Nucleotide-diphospho-sugar transferase, predicted (InterPro:IPR005069); BEST Arabidopsis thaliana protein match is: Nucleotide-diphospho-sugar transferase family protein (TAIR:AT1G14590.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).;Nucleotide-diphospho-sugar transferase family protein transcript=eq;prot=eq; + 2 No
AT2G25720 ath unknown protein; Has 38 Blast hits to 38 proteins in 18 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 38; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). transcript=eq;prot=eq; - 2 Yes
AT4G15970 ath Nucleotide-diphospho-sugar transferase family protein; CONTAINS InterPro DOMAIN/s: Nucleotide-diphospho-sugar transferase, predicted (InterPro:IPR005069); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G19970.1); Has 239 Blast hits to 233 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 239; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).;Nucleotide-diphospho-sugar transferase family protein transcript=eq;prot=eq; + 4 No
AT4G19970 ath CONTAINS InterPro DOMAIN/s: Nucleotide-diphospho-sugar transferase, predicted (InterPro:IPR005069); BEST Arabidopsis thaliana protein match is: Nucleotide-diphospho-sugar transferase family protein (TAIR:AT5G44820.1); Has 801 Blast hits to 466 proteins in 35 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 0; Plants - 750; Viruses - 0; Other Eukaryotes - 49 (source: NCBI BLink). transcript=eq;prot=eq; + 4 No
AT5G40900 ath Nucleotide-diphospho-sugar transferase family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Nucleotide-diphospho-sugar transferase, predicted (InterPro:IPR005069); BEST Arabidopsis thaliana protein match is: Nucleotide-diphospho-sugar transferase family protein (TAIR:AT1G14590.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).;Nucleotide-diphospho-sugar transferase family protein transcript=eq;prot=eq; + 5 No
AT5G44820 ath Nucleotide-diphospho-sugar transferase family protein; CONTAINS InterPro DOMAIN/s: Nucleotide-diphospho-sugar transferase, predicted (InterPro:IPR005069); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G19970.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).;Nucleotide-diphospho-sugar transferase family protein transcript=eq;prot=eq; - 5 No
BD1G01750 bdi Similar to glycosyltransferase. CAZy family GT77 pid=Bradi1g01750.1;tid=Bradi1g01750.1;GeneName=Bradi1g01750;Name=BdGT77E10;transcript=eq;prot=eq + Bd1 No
BD1G01760 bdi Similar to glycosyltransferase. CAZy family GT77 pid=Bradi1g01760.1;tid=Bradi1g01760.1;GeneName=Bradi1g01760;Name=BdGT77E11;transcript=eq;prot=eq + Bd1 No
BD1G09720 bdi Similar to glycosyltransferase. CAZy family GT77 pid=Bradi1g09720.1;tid=Bradi1g09720.1;GeneName=Bradi1g09720;Name=BdGT77E1;transcript=eq;prot=eq - Bd1 No
BD1G49780 bdi Similar to glycosyltransferase. CAZy family GT77 pid=Bradi1g49780.1;tid=Bradi1g49780.1;GeneName=Bradi1g49780;Name=BdGT77E7;transcript=eq;prot=eq - Bd1 No
BD1G52610 bdi Similar to glycosyltransferase. CAZy family GT77 pid=Bradi1g52610.1;tid=Bradi1g52610.1;GeneName=Bradi1g52610;Name=BdGT77E8;transcript=eq;prot=eq - Bd1 No
BD1G76460 bdi Similar to glycosyltransferase. CAZy family GT77 pid=Bradi1g76460.1;tid=Bradi1g76460.1;GeneName=Bradi1g76460;Name=BdGT77E17;transcript=eq;prot=eq + Bd1 No
BD2G58987 bdi pid=Bradi2g58987.1;tid=Bradi2g58987.1;GeneName=Bradi2g58987;transcript=eq;prot=eq + Bd2 No
BD2G58994 bdi pid=Bradi2g58994.1;tid=Bradi2g58994.1;GeneName=Bradi2g58994;transcript=eq;prot=eq + Bd2 No
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species
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