Gene family  

Sub-families
ORTHO001139 (41 genes in 23 species)
ORTHO001637 (36 genes in 22 species)
ORTHO005957 (25 genes in 19 species)
View all sub-families (12)
 
Keywords


Overview of gene family content




aly
Arabidopsis lyrata (10 genes)
ath
Arabidopsis thaliana (9 genes)
bdi
Brachypodium distachyon (9 genes)
cpa
Carica papaya (6 genes)
cre
Chlamydomonas reinhardtii (4 genes)
fve
Fragaria vesca (6 genes)
gma
Glycine max (14 genes)
lja
Lotus japonicus (5 genes)
mdo
Malus domestica (21 genes)
mes
Manihot esculenta (12 genes)
mrcc299
Micromonas sp. RCC299 (4 genes)
mtr
Medicago truncatula (4 genes)
olu
Ostreococcus lucimarinus (2 genes)
osa
Oryza sativa ssp. japonica (11 genes)
osaindica
Oryza sativa ssp. indica (12 genes)
ota
Ostreococcus tauri (3 genes)
ppa
Physcomitrella patens (8 genes)
ptr
Populus trichocarpa (10 genes)
rco
Ricinus communis (6 genes)
sbi
Sorghum bicolor (7 genes)
smo
Selaginella moellendorffii (2 genes)
tca
Theobroma cacao (6 genes)
vca
Volvox carteri (5 genes)
vvi
Vitis vinifera (6 genes)
zma
Zea mays (17 genes)



The gene family HOM000490 has 199 genes in 25 species (3 outlier genes).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
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Index of genes with 1 constraints:

Page 1 of 10, showing 20 records out of 199 total, starting on record 1, ending on 20

gene_id species description comment strand chr outlier
AL0G04010 aly name=scaffold_8500004.1;pid=921025;prot=eq;tid=952538 - scaffold_85 No
AL1G06420 aly name=fgenesh2_kg.1__665__AT1G06890.1;pid=470711;prot=eq;tid=470711 - scaffold_1 No
AL1G22330 aly name=scaffold_102356.1;pid=889562;prot=eq;tid=921075 - scaffold_1 No
AL1G35320 aly name=fgenesh2_kg.1__3510__AT1G34020.1;pid=473556;prot=eq;tid=473556 + scaffold_1 No
AL2G25620 aly name=fgenesh2_kg.2__1956__AT1G76670.1;pid=476826;prot=eq;tid=476826 - scaffold_2 No
AL4G11710 aly name=fgenesh1_pm.C_scaffold_4000618;pid=320561;prot=eq;tid=320561 - scaffold_4 No
AL4G15090 aly name=fgenesh1_pm.C_scaffold_4000857;pid=320800;prot=eq;tid=320800 - scaffold_4 No
AL6G31910 aly name=fgenesh2_kg.6__2967__AT4G09810.1;pid=489833;prot=eq;tid=489833 - scaffold_6 No
AL7G01350 aly name=fgenesh1_pm.C_scaffold_7000116;pid=327889;prot=eq;tid=327889 + scaffold_7 No
AL8G09090 aly name=scaffold_800931.1;pid=917531;prot=eq;tid=949044 - scaffold_8 No
AT1G06890 ath nodulin MtN21 /EamA-like transporter family protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF250 (InterPro:IPR004853); BEST Arabidopsis thaliana protein match is: Nucleotide/sugar transporter family protein (TAIR:AT2G30460.2); Has 2654 Blast hits to 2649 proteins in 293 species: Archae - 2; Bacteria - 105; Metazoa - 662; Fungi - 435; Plants - 1177; Viruses - 0; Other Eukaryotes - 273 (source: NCBI BLink).;nodulin MtN21 /EamA-like transporter family protein transcript=eq;prot=eq; - 1 No
AT1G21070 ath Nucleotide-sugar transporter family protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF250 (InterPro:IPR004853); BEST Arabidopsis thaliana protein match is: Nucleotide-sugar transporter family protein (TAIR:AT1G76670.1); Has 2012 Blast hits to 2008 proteins in 220 species: Archae - 0; Bacteria - 26; Metazoa - 397; Fungi - 317; Plants - 1060; Viruses - 0; Other Eukaryotes - 212 (source: NCBI BLink).;Nucleotide-sugar transporter family protein transcript=eq;prot=eq; - 1 No
AT1G34020 ath Nucleotide-sugar transporter family protein; LOCATED IN: plasma membrane, membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF250 (InterPro:IPR004853); BEST Arabidopsis thaliana protein match is: Nucleotide-sugar transporter family protein (TAIR:AT4G09810.1); Has 1634 Blast hits to 1631 proteins in 184 species: Archae - 0; Bacteria - 8; Metazoa - 360; Fungi - 216; Plants - 891; Viruses - 0; Other Eukaryotes - 159 (source: NCBI BLink).;Nucleotide-sugar transporter family protein transcript=eq;prot=eq; + 1 No
AT1G76670 ath Nucleotide-sugar transporter family protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF250 (InterPro:IPR004853); BEST Arabidopsis thaliana protein match is: Nucleotide-sugar transporter family protein (TAIR:AT1G21070.1); Has 1975 Blast hits to 1967 proteins in 210 species: Archae - 0; Bacteria - 20; Metazoa - 359; Fungi - 295; Plants - 1101; Viruses - 0; Other Eukaryotes - 200 (source: NCBI BLink).;Nucleotide-sugar transporter family protein transcript=eq;prot=eq; - 1 No
AT2G28315 ath Nucleotide/sugar transporter family protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF250 (InterPro:IPR004853); BEST Arabidopsis thaliana protein match is: nodulin MtN21 /EamA-like transporter family protein (TAIR:AT1G06890.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).;Nucleotide/sugar transporter family protein transcript=eq;prot=eq; + 2 No
AT2G30460 ath Nucleotide/sugar transporter family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system, membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF250 (InterPro:IPR004853); BEST Arabidopsis thaliana protein match is: nodulin MtN21 /EamA-like transporter family protein (TAIR:AT1G06890.2); Has 2820 Blast hits to 2813 proteins in 387 species: Archae - 4; Bacteria - 285; Metazoa - 660; Fungi - 411; Plants - 1167; Viruses - 0; Other Eukaryotes - 293 (source: NCBI BLink).;Nucleotide/sugar transporter family protein transcript=eq;prot=eq; - 2 No
AT4G09810 ath Nucleotide-sugar transporter family protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF250 (InterPro:IPR004853); BEST Arabidopsis thaliana protein match is: Nucleotide-sugar transporter family protein (TAIR:AT1G34020.1); Has 1601 Blast hits to 1598 proteins in 182 species: Archae - 0; Bacteria - 0; Metazoa - 311; Fungi - 204; Plants - 929; Viruses - 0; Other Eukaryotes - 157 (source: NCBI BLink).;Nucleotide-sugar transporter family protein transcript=eq;prot=eq; - 4 No
AT4G39390 ath Encodes a golgi localized nucleotide sugar transporter.;nucleotide sugar transporter-KT 1 transcript=eq;prot=eq; + 4 No
AT5G42420 ath Nucleotide-sugar transporter family protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF250 (InterPro:IPR004853); BEST Arabidopsis thaliana protein match is: Nucleotide-sugar transporter family protein (TAIR:AT1G21070.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).;Nucleotide-sugar transporter family protein transcript=eq;prot=eq; + 5 No
BD1G23497 bdi pid=Bradi1g23497.1;tid=Bradi1g23497.1;GeneName=Bradi1g23497;transcript=eq;prot=eq + Bd1 No
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