Gene family  

Sub-families
ORTHO004299 (27 genes in 18 species)
ORTHO007492 (23 genes in 17 species)
ORTHO007833 (22 genes in 17 species)
View all sub-families (19)
 
Keywords


Overview of gene family content




aly
Arabidopsis lyrata (13 genes)
ath
Arabidopsis thaliana (10 genes)
bdi
Brachypodium distachyon (11 genes)
cpa
Carica papaya (7 genes)
fve
Fragaria vesca (6 genes)
gma
Glycine max (20 genes)
lja
Lotus japonicus (5 genes)
mdo
Malus domestica (16 genes)
mes
Manihot esculenta (13 genes)
mtr
Medicago truncatula (6 genes)
osa
Oryza sativa ssp. japonica (12 genes)
osaindica
Oryza sativa ssp. indica (13 genes)
ppa
Physcomitrella patens (2 genes)
ptr
Populus trichocarpa (13 genes)
rco
Ricinus communis (8 genes)
sbi
Sorghum bicolor (11 genes)
smo
Selaginella moellendorffii (3 genes)
tca
Theobroma cacao (8 genes)
vvi
Vitis vinifera (8 genes)
zma
Zea mays (17 genes)



The gene family HOM000483 has 202 genes in 20 species (2 outlier genes).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
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Index of genes with 1 constraints:

Page 1 of 11, showing 20 records out of 202 total, starting on record 1, ending on 20

gene_id species description comment strand chr outlier
AL1G24070 aly name=fgenesh1_pg.C_scaffold_1002057;pid=335492;prot=eq;tid=335492 - scaffold_1 No
AL1G51820 aly name=scaffold_105519.1;pid=892725;prot=eq;tid=924238 - scaffold_1 No
AL2G20990 aly name=fgenesh1_pg.C_scaffold_2001542;pid=339443;prot=eq;tid=339443 + scaffold_2 No
AL3G06170 aly name=scaffold_300691.1;pid=896721;prot=eq;tid=928234 + scaffold_3 No
AL3G26460 aly name=scaffold_302865.1;pid=898895;prot=eq;tid=930408 - scaffold_3 No
AL3G27070 aly name=scaffold_302925.1;pid=898955;prot=eq;tid=930468 + scaffold_3 No
AL3G28040 aly name=fgenesh1_pg.C_scaffold_3002385;pid=342622;prot=eq;tid=342622 - scaffold_3 Yes
AL4G34980 aly name=scaffold_403653.1;pid=904152;prot=eq;tid=935665 + scaffold_4 No
AL5G32890 aly name=fgenesh2_kg.5__2692__AT3G61950.1;pid=486700;prot=eq;tid=486700 + scaffold_5 No
AL6G40110 aly name=fgenesh1_pm.C_scaffold_6002861;pid=327641;prot=eq;tid=327641 - scaffold_6 No
AL8G01490 aly name=fgenesh2_kg.8__126__AT5G46690.1;pid=494310;prot=eq;tid=494310 - scaffold_8 No
AL8G17820 aly name=Al_scaffold_0008_1712;pid=885448;prot=eq;tid=916961 - scaffold_8 No
AL8G32140 aly name=fgenesh1_pg.C_scaffold_8002520;pid=358733;prot=eq;tid=358733 - scaffold_8 No
AT1G22490 ath basic helix-loop-helix (bHLH) DNA-binding superfamily protein; FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Helix-loop-helix DNA-binding domain (InterPro:IPR001092), Helix-loop-helix DNA-binding (InterPro:IPR011598); BEST Arabidopsis thaliana protein match is: basic helix-loop-helix (bHLH) DNA-binding superfamily protein (TAIR:AT1G72210.1); Has 1544 Blast hits to 1534 proteins in 133 species: Archae - 0; Bacteria - 0; Metazoa - 47; Fungi - 34; Plants - 1460; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink).;basic helix-loop-helix (bHLH) DNA-binding superfamily protein transcript=eq;prot=eq; - 1 No
AT1G72210 ath basic helix-loop-helix (bHLH) DNA-binding superfamily protein; FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: Helix-loop-helix DNA-binding domain (InterPro:IPR001092), Helix-loop-helix DNA-binding (InterPro:IPR011598); BEST Arabidopsis thaliana protein match is: basic helix-loop-helix (bHLH) DNA-binding superfamily protein (TAIR:AT1G22490.1); Has 1596 Blast hits to 1587 proteins in 129 species: Archae - 0; Bacteria - 0; Metazoa - 28; Fungi - 30; Plants - 1534; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).;basic helix-loop-helix (bHLH) DNA-binding superfamily protein transcript=eq;prot=eq; + 1 No
AT2G46810 ath basic helix-loop-helix (bHLH) DNA-binding superfamily protein; FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: Helix-loop-helix DNA-binding domain (InterPro:IPR001092), Helix-loop-helix DNA-binding (InterPro:IPR011598); BEST Arabidopsis thaliana protein match is: basic helix-loop-helix (bHLH) DNA-binding superfamily protein (TAIR:AT3G61950.1); Has 1496 Blast hits to 1481 proteins in 142 species: Archae - 0; Bacteria - 20; Metazoa - 45; Fungi - 33; Plants - 1336; Viruses - 0; Other Eukaryotes - 62 (source: NCBI BLink).;basic helix-loop-helix (bHLH) DNA-binding superfamily protein transcript=eq;prot=eq; + 2 No
AT3G06120 ath Encodes a basic helix-loop-helix (bHLH) protein that controls meristemoid differentiation during stomatal development. In the absence of MUTE, meristemoids abort after excessive asymmetric divisions and fail to differentiate stomata.;basic helix-loop-helix (bHLH) DNA-binding superfamily protein transcript=eq;prot=eq; + 3 No
AT3G24140 ath Encodes a basic helix-loop-helix transcription factor whose activity is required to promote differentiation of stomatal guard cells and to halt proliferative divisions in their immediate precursors. Both transcript and protein are expressed in and are required for halting divisions at the end of the stomatal lineage. It also has a role in the promotion of guard cell fate and in controlling the transition from guard mother cell to guard cell.;basic helix-loop-helix (bHLH) DNA-binding superfamily protein transcript=eq;prot=eq; - 3 No
AT3G61950 ath basic helix-loop-helix (bHLH) DNA-binding superfamily protein; FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Helix-loop-helix DNA-binding domain (InterPro:IPR001092), Helix-loop-helix DNA-binding (InterPro:IPR011598); BEST Arabidopsis thaliana protein match is: basic helix-loop-helix (bHLH) DNA-binding superfamily protein (TAIR:AT2G46810.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).;basic helix-loop-helix (bHLH) DNA-binding superfamily protein transcript=eq;prot=eq; + 3 No
AT4G01460 ath basic helix-loop-helix (bHLH) DNA-binding superfamily protein; FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Helix-loop-helix DNA-binding domain (InterPro:IPR001092), Helix-loop-helix DNA-binding (InterPro:IPR011598); BEST Arabidopsis thaliana protein match is: basic helix-loop-helix (bHLH) DNA-binding superfamily protein (TAIR:AT3G61950.1); Has 1536 Blast hits to 1519 proteins in 127 species: Archae - 0; Bacteria - 0; Metazoa - 22; Fungi - 44; Plants - 1468; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).;basic helix-loop-helix (bHLH) DNA-binding superfamily protein transcript=eq;prot=eq; + 4 No
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