Gene family  

Sub-families
ORTHO000465 (58 genes in 23 species)
ORTHO006314 (24 genes in 17 species)
ORTHO014002 (12 genes in 9 species)
View all sub-families (19)
 
Keywords


Overview of gene family content




aly
Arabidopsis lyrata (14 genes)
ath
Arabidopsis thaliana (16 genes)
bdi
Brachypodium distachyon (7 genes)
cpa
Carica papaya (8 genes)
cre
Chlamydomonas reinhardtii (1 gene)
fve
Fragaria vesca (9 genes)
gma
Glycine max (23 genes)
lja
Lotus japonicus (6 genes)
mdo
Malus domestica (24 genes)
mes
Manihot esculenta (9 genes)
mrcc299
Micromonas sp. RCC299 (2 genes)
mtr
Medicago truncatula (10 genes)
olu
Ostreococcus lucimarinus (1 gene)
osa
Oryza sativa ssp. japonica (9 genes)
osaindica
Oryza sativa ssp. indica (7 genes)
ota
Ostreococcus tauri (1 gene)
ppa
Physcomitrella patens (3 genes)
ptr
Populus trichocarpa (12 genes)
rco
Ricinus communis (8 genes)
sbi
Sorghum bicolor (13 genes)
tca
Theobroma cacao (10 genes)
vca
Volvox carteri (1 gene)
vvi
Vitis vinifera (1 gene)
zma
Zea mays (10 genes)



The gene family HOM000472 has 205 genes in 24 species (15 outlier genes).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
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Index of genes with 1 constraints:

Page 1 of 11, showing 20 records out of 205 total, starting on record 1, ending on 20

gene_id species description comment strand chr outlier
AL0G05890 aly name=scaffold_19100002.1;pid=920313;prot=eq;tid=951826 - scaffold_191 No
AL1G03590 aly name=fgenesh2_kg.1__356__AT1G04260.1;pid=470402;prot=eq;tid=470402 - scaffold_1 No
AL1G08420 aly name=scaffold_100906.1;pid=888112;prot=eq;tid=919625 + scaffold_1 No
AL1G18660 aly name=scaffold_101974.1;pid=889180;prot=eq;tid=920693 + scaffold_1 No
AL1G49760 aly name=scaffold_105305.1;pid=892511;prot=eq;tid=924024 + scaffold_1 No
AL1G50270 aly name=scaffold_105359.1;pid=892565;prot=eq;tid=924078 + scaffold_1 No
AL3G14320 aly name=scaffold_301584.1;pid=897614;prot=eq;tid=929127 - scaffold_3 No
AL4G24690 aly name=fgenesh2_kg.4__1906__AT2G38360.1;pid=482846;prot=eq;tid=482846 - scaffold_4 No
AL4G27240 aly name=fgenesh2_kg.4__2152__AT2G40380.1;pid=483092;prot=eq;tid=483092 - scaffold_4 No
AL5G26360 aly name=fgenesh2_kg.5__2042__AT3G56110.1;pid=486050;prot=eq;tid=486050 - scaffold_5 No
AL6G00420 aly name=scaffold_600043.1;pid=907986;prot=eq;tid=939499 + scaffold_6 No
AL6G04980 aly name=scaffold_600510.1;pid=908453;prot=eq;tid=939966 + scaffold_6 No
AL6G06820 aly name=scaffold_600706.1;pid=908649;prot=eq;tid=940162 + scaffold_6 No
AL8G21680 aly name=scaffold_802167.1;pid=918767;prot=eq;tid=950280 - scaffold_8 No
AT1G04260 ath Encodes protein that interacts with CaMV movement protein. Colocalizes in the cytoplasm with the movement protein. Has similarity to mammalian proteins (such as the rat PRA1) which have been described as rab acceptors.;CAMV movement protein interacting protein 7 transcript=eq;prot=eq; - 1 No
AT1G08770 ath prenylated RAB acceptor 1.E (PRA1.E); CONTAINS InterPro DOMAIN/s: Prenylated rab acceptor PRA1 (InterPro:IPR004895); BEST Arabidopsis thaliana protein match is: PRA1 (Prenylated rab acceptor) family protein (TAIR:AT1G55190.1); Has 522 Blast hits to 522 proteins in 132 species: Archae - 0; Bacteria - 0; Metazoa - 107; Fungi - 87; Plants - 296; Viruses - 0; Other Eukaryotes - 32 (source: NCBI BLink).;prenylated RAB acceptor 1.E transcript=eq;prot=eq; + 1 No
AT1G17700 ath prenylated RAB acceptor 1.F1 (PRA1.F1); CONTAINS InterPro DOMAIN/s: Prenylated rab acceptor PRA1 (InterPro:IPR004895); BEST Arabidopsis thaliana protein match is: PRA1 (Prenylated rab acceptor) family protein (TAIR:AT1G55190.1); Has 501 Blast hits to 501 proteins in 103 species: Archae - 0; Bacteria - 0; Metazoa - 111; Fungi - 27; Plants - 322; Viruses - 0; Other Eukaryotes - 41 (source: NCBI BLink).;prenylated RAB acceptor 1.F1 transcript=eq;prot=eq; + 1 No
AT1G55190 ath PRA7; INVOLVED IN: vesicle-mediated transport; LOCATED IN: endoplasmic reticulum, plasma membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Prenylated rab acceptor PRA1 (InterPro:IPR004895); BEST Arabidopsis thaliana protein match is: PRA1 (Prenylated rab acceptor) family protein (TAIR:AT3G13720.1); Has 523 Blast hits to 523 proteins in 128 species: Archae - 0; Bacteria - 0; Metazoa - 75; Fungi - 90; Plants - 309; Viruses - 6; Other Eukaryotes - 43 (source: NCBI BLink).;PRA1 (Prenylated rab acceptor) family protein transcript=eq;prot=eq; + 1 No
AT1G55640 ath prenylated RAB acceptor 1.G1 (PRA1.G1); CONTAINS InterPro DOMAIN/s: Prenylated rab acceptor PRA1 (InterPro:IPR004895); BEST Arabidopsis thaliana protein match is: prenylated RAB acceptor 1.G2 (TAIR:AT5G56230.1); Has 359 Blast hits to 359 proteins in 52 species: Archae - 0; Bacteria - 0; Metazoa - 27; Fungi - 19; Plants - 293; Viruses - 0; Other Eukaryotes - 20 (source: NCBI BLink).;prenylated RAB acceptor 1.G1 transcript=eq;prot=eq; + 1 No
AT2G38360 ath prenylated RAB acceptor 1.B4 (PRA1.B4); CONTAINS InterPro DOMAIN/s: Prenylated rab acceptor PRA1 (InterPro:IPR004895); BEST Arabidopsis thaliana protein match is: prenylated RAB acceptor 1.B5 (TAIR:AT5G01640.1); Has 506 Blast hits to 506 proteins in 121 species: Archae - 0; Bacteria - 0; Metazoa - 113; Fungi - 53; Plants - 299; Viruses - 0; Other Eukaryotes - 41 (source: NCBI BLink).;prenylated RAB acceptor 1.B4 transcript=eq;prot=eq; - 2 No
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