Gene family  

Sub-families
ORTHO001948 (34 genes in 20 species)
ORTHO007441 (23 genes in 19 species)
ORTHO012297 (16 genes in 6 species)
View all sub-families (23)
 
Keywords


Overview of gene family content




aly
Arabidopsis lyrata (8 genes)
ath
Arabidopsis thaliana (5 genes)
bdi
Brachypodium distachyon (4 genes)
cpa
Carica papaya (2 genes)
fve
Fragaria vesca (10 genes)
gma
Glycine max (28 genes)
lja
Lotus japonicus (9 genes)
mdo
Malus domestica (24 genes)
mes
Manihot esculenta (20 genes)
mtr
Medicago truncatula (24 genes)
osa
Oryza sativa ssp. japonica (4 genes)
osaindica
Oryza sativa ssp. indica (6 genes)
ppa
Physcomitrella patens (2 genes)
ptr
Populus trichocarpa (21 genes)
rco
Ricinus communis (6 genes)
sbi
Sorghum bicolor (4 genes)
smo
Selaginella moellendorffii (2 genes)
tca
Theobroma cacao (16 genes)
vvi
Vitis vinifera (8 genes)
zma
Zea mays (3 genes)



The gene family HOM000471 has 206 genes in 20 species (17 outlier genes).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
This page uses the Flash plugin.




Index of genes with 1 constraints:

Page 1 of 11, showing 20 records out of 206 total, starting on record 1, ending on 20

gene_id species description comment strand chr outlier
AL1G13890 aly name=Al_scaffold_0001_1368;pid=879601;prot=eq;tid=911114 - scaffold_1 No
AL1G25920 aly name=scaffold_102753.1;pid=889959;prot=eq;tid=921472 - scaffold_1 No
AL1G43520 aly name=scaffold_104617.1;pid=891823;prot=eq;tid=923336 - scaffold_1 No
AL2G06170 aly name=Al_scaffold_0002_559;pid=875965;prot=eq;tid=907478 - scaffold_2 No
AL2G18560 aly name=fgenesh2_kg.2__1271__AT1G70170.1;pid=476141;prot=eq;tid=476141 + scaffold_2 No
AL4G32890 aly name=fgenesh2_kg.4__2695__AT2G45040.1;pid=483635;prot=eq;tid=483635 + scaffold_4 No
AL6G14560 aly name=Al_scaffold_0006_1378;pid=861869;prot=eq;tid=893382 - scaffold_6 No
AL7G26420 aly name=fgenesh2_kg.7__2645__AT4G16640.1;pid=493212;prot=eq;tid=493212 - scaffold_7 No
AT1G24140 ath Matrixin family protein; FUNCTIONS IN: metallopeptidase activity, metalloendopeptidase activity, zinc ion binding; INVOLVED IN: proteolysis, metabolic process; LOCATED IN: anchored to membrane; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase M10, metallopeptidase (InterPro:IPR001818), Peptidoglycan binding-like (InterPro:IPR002477), Peptidase M10A, cysteine switch, zinc binding site (InterPro:IPR021158), Peptidase M10A, matrix metallopeptidase (InterPro:IPR021190), Peptidase, metallopeptidase (InterPro:IPR006026); BEST Arabidopsis thaliana protein match is: matrix metalloproteinase (TAIR:AT1G70170.1); Has 2621 Blast hits to 2428 proteins in 195 species: Archae - 3; Bacteria - 89; Metazoa - 2200; Fungi - 4; Plants - 185; Viruses - 42; Other Eukaryotes - 98 (source: NCBI BLink).;Matrixin family protein transcript=eq;prot=eq; - 1 No
AT1G59970 ath Matrixin family protein; FUNCTIONS IN: metallopeptidase activity, metalloendopeptidase activity, zinc ion binding; INVOLVED IN: proteolysis, metabolic process; LOCATED IN: plasma membrane, anchored to membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase M10, metallopeptidase (InterPro:IPR001818), Peptidoglycan binding-like (InterPro:IPR002477), Peptidase M10A, cysteine switch, zinc binding site (InterPro:IPR021158), Peptidase M10A, matrix metallopeptidase (InterPro:IPR021190), Peptidase, metallopeptidase (InterPro:IPR006026); BEST Arabidopsis thaliana protein match is: Matrixin family protein (TAIR:AT1G24140.1); Has 2665 Blast hits to 2469 proteins in 210 species: Archae - 2; Bacteria - 119; Metazoa - 2216; Fungi - 6; Plants - 186; Viruses - 42; Other Eukaryotes - 94 (source: NCBI BLink).;Matrixin family protein transcript=eq;prot=eq; + 1 No
AT1G70170 ath mutant has Late flowering; Early senescence; Matrix Metalloproteinase;matrix metalloproteinase transcript=eq;prot=eq; + 1 No
AT2G45040 ath Matrixin family protein; FUNCTIONS IN: metallopeptidase activity, metalloendopeptidase activity, zinc ion binding; INVOLVED IN: proteolysis, metabolic process; LOCATED IN: anchored to membrane; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Peptidase M10, metallopeptidase (InterPro:IPR001818), Peptidoglycan binding-like (InterPro:IPR002477), Peptidase M10A, matrix metallopeptidase (InterPro:IPR021190), Peptidase, metallopeptidase (InterPro:IPR006026); BEST Arabidopsis thaliana protein match is: Matrixin family protein (TAIR:AT4G16640.1); Has 2623 Blast hits to 2423 proteins in 190 species: Archae - 2; Bacteria - 81; Metazoa - 2217; Fungi - 5; Plants - 182; Viruses - 44; Other Eukaryotes - 92 (source: NCBI BLink).;Matrixin family protein transcript=eq;prot=eq; + 2 No
AT4G16640 ath Matrixin family protein; FUNCTIONS IN: metallopeptidase activity, metalloendopeptidase activity, zinc ion binding; INVOLVED IN: proteolysis, metabolic process; LOCATED IN: anchored to membrane; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Peptidase M10, metallopeptidase (InterPro:IPR001818), Peptidoglycan binding-like (InterPro:IPR002477), Peptidase M10A, matrix metallopeptidase (InterPro:IPR021190), Peptidase, metallopeptidase (InterPro:IPR006026); BEST Arabidopsis thaliana protein match is: Matrixin family protein (TAIR:AT2G45040.1); Has 2701 Blast hits to 2501 proteins in 212 species: Archae - 6; Bacteria - 141; Metazoa - 2219; Fungi - 5; Plants - 183; Viruses - 44; Other Eukaryotes - 103 (source: NCBI BLink).;Matrixin family protein transcript=eq;prot=eq; - 4 No
BD1G44690 bdi serine-type endopeptidase activity, metalloendopeptidase activity (Blast2GO) pid=Bradi1g44690.1;tid=Bradi1g44690.1;GeneName=Bradi1g44690;transcript=eq;prot=eq - Bd1 No
BD1G78530 bdi metalloendopeptidase activity (Blast2GO) pid=Bradi1g78530.1;tid=Bradi1g78530.1;GeneName=Bradi1g78530;transcript=eq;prot=eq + Bd1 No
BD3G33217 bdi pid=Bradi3g33217.1;tid=Bradi3g33217.1;GeneName=Bradi3g33217;transcript=eq;prot=eq - Bd3 No
BD3G59680 bdi metalloendopeptidase activity (Blast2GO) pid=Bradi3g59680.1;tid=Bradi3g59680.1;GeneName=Bradi3g59680;transcript=eq;prot=eq + Bd3 No
CP00005G03280 cpa name=evm.TU.supercontig_5.328;pid=evm.TU.supercontig_5.328;prot=eq;transcript=eq + supercontig_5 No
CP00029G01660 cpa name=evm.TU.supercontig_29.166;pid=evm.TU.supercontig_29.166;prot=eq;transcript=eq - supercontig_29 No
FV0G38020 fve Metalloendoproteinase 1, Precursor (probable) transcript=eq;prot=eq;pid=gene28335 - scf0513124 No
<< previous
1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 next >>

Download genes

Include following columns
gene_id
species
description
comment
strand
chr
outlier