Gene family 
- Id
- HOM000471
- Method
- BLASTP E_value=1e-05 MCL_I=2
- Sequences
- Sub-families
-
ORTHO001948 (34 genes in 20 species)
ORTHO007441 (23 genes in 19 species)
ORTHO012297 (16 genes in 6 species)
View all sub-families (23)
- Keywords
-
Overview of gene family content
- aly
- Arabidopsis lyrata (8 genes)
- ath
- Arabidopsis thaliana (5 genes)
- bdi
- Brachypodium distachyon (4 genes)
- cpa
- Carica papaya (2 genes)
- fve
- Fragaria vesca (10 genes)
- gma
- Glycine max (28 genes)
- lja
- Lotus japonicus (9 genes)
- mdo
- Malus domestica (24 genes)
- mes
- Manihot esculenta (20 genes)
- mtr
- Medicago truncatula (24 genes)
- osa
- Oryza sativa ssp. japonica (4 genes)
- osaindica
- Oryza sativa ssp. indica (6 genes)
- ppa
- Physcomitrella patens (2 genes)
- ptr
- Populus trichocarpa (21 genes)
- rco
- Ricinus communis (6 genes)
- sbi
- Sorghum bicolor (4 genes)
- smo
- Selaginella moellendorffii (2 genes)
- tca
- Theobroma cacao (16 genes)
- vvi
- Vitis vinifera (8 genes)
- zma
- Zea mays (3 genes)
The gene family HOM000471 has 206 genes in 20 species (17 outlier genes).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
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Index of genes with 1 constraints:
- gene family : HOM000471
Page 1 of 11, showing 20 records out of 206 total, starting on record 1, ending on 20
| gene_id | species | description | comment | strand | chr | outlier |
|---|---|---|---|---|---|---|
| AL1G13890 | aly | name=Al_scaffold_0001_1368;pid=879601;prot=eq;tid=911114 | - | scaffold_1 | No | |
| AL1G25920 | aly | name=scaffold_102753.1;pid=889959;prot=eq;tid=921472 | - | scaffold_1 | No | |
| AL1G43520 | aly | name=scaffold_104617.1;pid=891823;prot=eq;tid=923336 | - | scaffold_1 | No | |
| AL2G06170 | aly | name=Al_scaffold_0002_559;pid=875965;prot=eq;tid=907478 | - | scaffold_2 | No | |
| AL2G18560 | aly | name=fgenesh2_kg.2__1271__AT1G70170.1;pid=476141;prot=eq;tid=476141 | + | scaffold_2 | No | |
| AL4G32890 | aly | name=fgenesh2_kg.4__2695__AT2G45040.1;pid=483635;prot=eq;tid=483635 | + | scaffold_4 | No | |
| AL6G14560 | aly | name=Al_scaffold_0006_1378;pid=861869;prot=eq;tid=893382 | - | scaffold_6 | No | |
| AL7G26420 | aly | name=fgenesh2_kg.7__2645__AT4G16640.1;pid=493212;prot=eq;tid=493212 | - | scaffold_7 | No | |
| AT1G24140 | ath | Matrixin family protein; FUNCTIONS IN: metallopeptidase activity, metalloendopeptidase activity, zinc ion binding; INVOLVED IN: proteolysis, metabolic process; LOCATED IN: anchored to membrane; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase M10, metallopeptidase (InterPro:IPR001818), Peptidoglycan binding-like (InterPro:IPR002477), Peptidase M10A, cysteine switch, zinc binding site (InterPro:IPR021158), Peptidase M10A, matrix metallopeptidase (InterPro:IPR021190), Peptidase, metallopeptidase (InterPro:IPR006026); BEST Arabidopsis thaliana protein match is: matrix metalloproteinase (TAIR:AT1G70170.1); Has 2621 Blast hits to 2428 proteins in 195 species: Archae - 3; Bacteria - 89; Metazoa - 2200; Fungi - 4; Plants - 185; Viruses - 42; Other Eukaryotes - 98 (source: NCBI BLink).;Matrixin family protein | transcript=eq;prot=eq; | - | 1 | No |
| AT1G59970 | ath | Matrixin family protein; FUNCTIONS IN: metallopeptidase activity, metalloendopeptidase activity, zinc ion binding; INVOLVED IN: proteolysis, metabolic process; LOCATED IN: plasma membrane, anchored to membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase M10, metallopeptidase (InterPro:IPR001818), Peptidoglycan binding-like (InterPro:IPR002477), Peptidase M10A, cysteine switch, zinc binding site (InterPro:IPR021158), Peptidase M10A, matrix metallopeptidase (InterPro:IPR021190), Peptidase, metallopeptidase (InterPro:IPR006026); BEST Arabidopsis thaliana protein match is: Matrixin family protein (TAIR:AT1G24140.1); Has 2665 Blast hits to 2469 proteins in 210 species: Archae - 2; Bacteria - 119; Metazoa - 2216; Fungi - 6; Plants - 186; Viruses - 42; Other Eukaryotes - 94 (source: NCBI BLink).;Matrixin family protein | transcript=eq;prot=eq; | + | 1 | No |
| AT1G70170 | ath | mutant has Late flowering; Early senescence; Matrix Metalloproteinase;matrix metalloproteinase | transcript=eq;prot=eq; | + | 1 | No |
| AT2G45040 | ath | Matrixin family protein; FUNCTIONS IN: metallopeptidase activity, metalloendopeptidase activity, zinc ion binding; INVOLVED IN: proteolysis, metabolic process; LOCATED IN: anchored to membrane; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Peptidase M10, metallopeptidase (InterPro:IPR001818), Peptidoglycan binding-like (InterPro:IPR002477), Peptidase M10A, matrix metallopeptidase (InterPro:IPR021190), Peptidase, metallopeptidase (InterPro:IPR006026); BEST Arabidopsis thaliana protein match is: Matrixin family protein (TAIR:AT4G16640.1); Has 2623 Blast hits to 2423 proteins in 190 species: Archae - 2; Bacteria - 81; Metazoa - 2217; Fungi - 5; Plants - 182; Viruses - 44; Other Eukaryotes - 92 (source: NCBI BLink).;Matrixin family protein | transcript=eq;prot=eq; | + | 2 | No |
| AT4G16640 | ath | Matrixin family protein; FUNCTIONS IN: metallopeptidase activity, metalloendopeptidase activity, zinc ion binding; INVOLVED IN: proteolysis, metabolic process; LOCATED IN: anchored to membrane; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Peptidase M10, metallopeptidase (InterPro:IPR001818), Peptidoglycan binding-like (InterPro:IPR002477), Peptidase M10A, matrix metallopeptidase (InterPro:IPR021190), Peptidase, metallopeptidase (InterPro:IPR006026); BEST Arabidopsis thaliana protein match is: Matrixin family protein (TAIR:AT2G45040.1); Has 2701 Blast hits to 2501 proteins in 212 species: Archae - 6; Bacteria - 141; Metazoa - 2219; Fungi - 5; Plants - 183; Viruses - 44; Other Eukaryotes - 103 (source: NCBI BLink).;Matrixin family protein | transcript=eq;prot=eq; | - | 4 | No |
| BD1G44690 | bdi | serine-type endopeptidase activity, metalloendopeptidase activity (Blast2GO) | pid=Bradi1g44690.1;tid=Bradi1g44690.1;GeneName=Bradi1g44690;transcript=eq;prot=eq | - | Bd1 | No |
| BD1G78530 | bdi | metalloendopeptidase activity (Blast2GO) | pid=Bradi1g78530.1;tid=Bradi1g78530.1;GeneName=Bradi1g78530;transcript=eq;prot=eq | + | Bd1 | No |
| BD3G33217 | bdi | pid=Bradi3g33217.1;tid=Bradi3g33217.1;GeneName=Bradi3g33217;transcript=eq;prot=eq | - | Bd3 | No | |
| BD3G59680 | bdi | metalloendopeptidase activity (Blast2GO) | pid=Bradi3g59680.1;tid=Bradi3g59680.1;GeneName=Bradi3g59680;transcript=eq;prot=eq | + | Bd3 | No |
| CP00005G03280 | cpa | name=evm.TU.supercontig_5.328;pid=evm.TU.supercontig_5.328;prot=eq;transcript=eq | + | supercontig_5 | No | |
| CP00029G01660 | cpa | name=evm.TU.supercontig_29.166;pid=evm.TU.supercontig_29.166;prot=eq;transcript=eq | - | supercontig_29 | No | |
| FV0G38020 | fve | Metalloendoproteinase 1, Precursor (probable) | transcript=eq;prot=eq;pid=gene28335 | - | scf0513124 | No |