Gene family  

Sub-families
ORTHO000113 (105 genes in 24 species)
ORTHO001182 (41 genes in 25 species)
ORTHO008139 (22 genes in 19 species)
View all sub-families (5)
 
Keywords


Overview of gene family content




aly
Arabidopsis lyrata (11 genes)
ath
Arabidopsis thaliana (12 genes)
bdi
Brachypodium distachyon (9 genes)
cpa
Carica papaya (6 genes)
cre
Chlamydomonas reinhardtii (2 genes)
fve
Fragaria vesca (6 genes)
gma
Glycine max (14 genes)
lja
Lotus japonicus (14 genes)
mdo
Malus domestica (16 genes)
mes
Manihot esculenta (7 genes)
mrcc299
Micromonas sp. RCC299 (3 genes)
mtr
Medicago truncatula (11 genes)
olu
Ostreococcus lucimarinus (2 genes)
osa
Oryza sativa ssp. japonica (11 genes)
osaindica
Oryza sativa ssp. indica (12 genes)
ota
Ostreococcus tauri (3 genes)
ppa
Physcomitrella patens (12 genes)
ptr
Populus trichocarpa (10 genes)
rco
Ricinus communis (7 genes)
sbi
Sorghum bicolor (12 genes)
smo
Selaginella moellendorffii (4 genes)
tca
Theobroma cacao (5 genes)
vca
Volvox carteri (2 genes)
vvi
Vitis vinifera (7 genes)
zma
Zea mays (14 genes)



The gene family HOM000457 has 212 genes in 25 species (18 outlier genes).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
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Index of genes with 1 constraints:

Page 1 of 11, showing 20 records out of 212 total, starting on record 1, ending on 20

gene_id species description comment strand chr outlier
AL1G32270 aly name=fgenesh1_pm.C_scaffold_1002513;pid=313733;prot=eq;tid=313733 + scaffold_1 No
AL3G34350 aly name=fgenesh2_kg.3__3061__AT2G14720.2;pid=480360;prot=eq;tid=480360 - scaffold_3 No
AL3G34360 aly name=scaffold_303661.1;pid=899691;prot=eq;tid=931204 + scaffold_3 No
AL4G14900 aly name=fgenesh2_kg.4__1000__AT2G30290.1;pid=481940;prot=eq;tid=481940 - scaffold_4 No
AL4G20260 aly name=fgenesh1_pm.C_scaffold_4001267;pid=321210;prot=eq;tid=321210 + scaffold_4 No
AL5G15260 aly name=scaffold_501582.1;pid=905878;prot=eq;tid=937391 - scaffold_5 No
AL5G22770 aly name=scaffold_502367.1;pid=906663;prot=eq;tid=938176 + scaffold_5 No
AL6G31250 aly name=fgenesh2_kg.6__2917__AT4G09080.1;pid=489783;prot=eq;tid=489783 + scaffold_6 No
AL7G22260 aly name=fgenesh2_kg.7__2289__AT4G20130.1;pid=492856;prot=eq;tid=492856 - scaffold_7 No
AL7G22270 aly name=fgenesh2_kg.7__2290__AT4G20110.1;pid=492857;prot=eq;tid=492857 - scaffold_7 No
AL8G25420 aly name=Al_scaffold_0008_2419;pid=886155;prot=eq;tid=917668 + scaffold_8 No
AT1G30900 ath VACUOLAR SORTING RECEPTOR 6 (VSR6); FUNCTIONS IN: calcium ion binding; INVOLVED IN: protein targeting to vacuole; LOCATED IN: integral to plasma membrane, Golgi transport complex; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Protease-associated PA (InterPro:IPR003137), EGF-like calcium-binding, conserved site (InterPro:IPR018097), EGF-like calcium-binding (InterPro:IPR001881), Growth factor, receptor (InterPro:IPR009030); BEST Arabidopsis thaliana protein match is: VACUOLAR SORTING RECEPTOR 5 (TAIR:AT2G34940.1); Has 12335 Blast hits to 5905 proteins in 215 species: Archae - 2; Bacteria - 51; Metazoa - 11201; Fungi - 6; Plants - 368; Viruses - 0; Other Eukaryotes - 707 (source: NCBI BLink).;VACUOLAR SORTING RECEPTOR 6 transcript=eq;prot=eq; + 1 No
AT1G35860 ath TOC75 pseudogene due to a 5.4-kb gypsy/Ty3-related retrotransposon inserted at the 5' end of the gene;translocon outer membrane complex 75-I transcript=eq;prot=eq; - 1 No
AT1G35880 ath unknown protein; Has 251 Blast hits to 234 proteins in 66 species: Archae - 2; Bacteria - 48; Metazoa - 87; Fungi - 9; Plants - 70; Viruses - 0; Other Eukaryotes - 35 (source: NCBI BLink). transcript=eq;prot=eq; - 1 Yes
AT2G14720 ath encodes a vacuolar sorting receptor;vacuolar sorting receptor 4 transcript=eq;prot=eq; - 2 No
AT2G14740 ath Encodes a vacuolar sorting receptor that participates in vacuolar sorting in vegetative tissues and in seeds.;vaculolar sorting receptor 3 transcript=eq;prot=eq; + 2 No
AT2G30290 ath VACUOLAR SORTING RECEPTOR 2 (VSR2); FUNCTIONS IN: calcium ion binding; INVOLVED IN: protein targeting to vacuole; LOCATED IN: integral to plasma membrane, Golgi transport complex; EXPRESSED IN: petal, leaf whorl, male gametophyte, flower, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Protease-associated PA (InterPro:IPR003137), EGF-like calcium-binding, conserved site (InterPro:IPR018097), EGF calcium-binding (InterPro:IPR013091), EGF-like calcium-binding (InterPro:IPR001881), Growth factor, receptor (InterPro:IPR009030); BEST Arabidopsis thaliana protein match is: vacuolar sorting receptor homolog 1 (TAIR:AT3G52850.1).;VACUOLAR SORTING RECEPTOR 2 transcript=eq;prot=eq; - 2 No
AT2G34940 ath VACUOLAR SORTING RECEPTOR 5 (VSR5); FUNCTIONS IN: calcium ion binding; INVOLVED IN: protein targeting to vacuole; LOCATED IN: integral to plasma membrane, Golgi transport complex; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Protease-associated PA (InterPro:IPR003137), EGF-like calcium-binding, conserved site (InterPro:IPR018097), EGF-like calcium-binding (InterPro:IPR001881), Growth factor, receptor (InterPro:IPR009030); BEST Arabidopsis thaliana protein match is: VACUOLAR SORTING RECEPTOR 6 (TAIR:AT1G30900.1); Has 10681 Blast hits to 5483 proteins in 264 species: Archae - 0; Bacteria - 175; Metazoa - 9320; Fungi - 5; Plants - 378; Viruses - 0; Other Eukaryotes - 803 (source: NCBI BLink).;VACUOLAR SORTING RECEPTOR 5 transcript=eq;prot=eq; + 2 No
AT3G46740 ath Component of the translocon outer membrane (TOC) complex. Forms the outer envelope translocation channel (beta-barrel). Plays a role in preprotein conductance. Imported into chloroplast. Expressed in young dividing photosynthetic tissues. Knockout mutants are embryo lethal with arrested development at the two-cell stage. Knockout mutants have abnormal etioplasts.;translocon at the outer envelope membrane of chloroplasts 75-III transcript=eq;prot=eq; - 3 No
AT3G52850 ath Encodes the Vacuolar Sorting Receptor-1 (VSR-1)/Epidermal Growth Factor Receptor-like protein1(VSR-1/ATELP1). Binds vacuolar targeting signals. Involved in sorting seed storage proteins into vacuoles.;vacuolar sorting receptor homolog 1 transcript=eq;prot=eq; + 3 No
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