Gene family  

Sub-families
ORTHO000667 (50 genes in 22 species)
ORTHO000731 (48 genes in 24 species)
ORTHO002238 (33 genes in 20 species)
View all sub-families (12)
 
Keywords


Overview of gene family content




aly
Arabidopsis lyrata (6 genes)
ath
Arabidopsis thaliana (10 genes)
bdi
Brachypodium distachyon (7 genes)
cpa
Carica papaya (7 genes)
cre
Chlamydomonas reinhardtii (3 genes)
fve
Fragaria vesca (12 genes)
gma
Glycine max (13 genes)
lja
Lotus japonicus (12 genes)
mdo
Malus domestica (14 genes)
mes
Manihot esculenta (10 genes)
mrcc299
Micromonas sp. RCC299 (6 genes)
mtr
Medicago truncatula (10 genes)
olu
Ostreococcus lucimarinus (7 genes)
osa
Oryza sativa ssp. japonica (9 genes)
osaindica
Oryza sativa ssp. indica (10 genes)
ota
Ostreococcus tauri (4 genes)
ppa
Physcomitrella patens (8 genes)
ptr
Populus trichocarpa (12 genes)
rco
Ricinus communis (7 genes)
sbi
Sorghum bicolor (8 genes)
smo
Selaginella moellendorffii (7 genes)
tca
Theobroma cacao (8 genes)
vca
Volvox carteri (3 genes)
vvi
Vitis vinifera (12 genes)
zma
Zea mays (8 genes)



The gene family HOM000452 has 213 genes in 25 species (16 outlier genes).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
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Index of genes with 1 constraints:

Page 1 of 11, showing 20 records out of 213 total, starting on record 1, ending on 20

gene_id species description comment strand chr outlier
AL1G05000 aly name=fgenesh2_kg.1__504__AT1G05500.1;pid=470550;prot=eq;tid=470550 + scaffold_1 No
AL1G21160 aly name=fgenesh1_pm.C_scaffold_1001716;pid=312936;prot=eq;tid=312936 + scaffold_1 No
AL4G00120 aly name=fgenesh2_kg.4__11__AT2G20990.1;pid=480951;prot=eq;tid=480951 + scaffold_4 No
AL5G31670 aly name=fgenesh2_kg.5__2565__AT3G61050.2;pid=486573;prot=eq;tid=486573 + scaffold_5 No
AL6G03550 aly name=fgenesh1_pm.C_scaffold_6000289;pid=325069;prot=eq;tid=325069 - scaffold_6 No
AL6G10880 aly name=fgenesh1_pm.C_scaffold_6000863;pid=325643;prot=eq;tid=325643 + scaffold_6 No
AT1G05500 ath Encodes a endomembrane-localized synaptotagmin. Synaptotagmin family proteins are calcium sensors that regulate exocytosis in mammalian cells.;Calcium-dependent lipid-binding (CaLB domain) family protein transcript=eq;prot=eq; + 1 No
AT1G20080 ath SYTB; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: C2 membrane targeting protein (InterPro:IPR018029), C2 calcium/lipid-binding domain, CaLB (InterPro:IPR008973), C2 region (InterPro:IPR020477), C2 calcium-dependent membrane targeting (InterPro:IPR000008); BEST Arabidopsis thaliana protein match is: synaptotagmin A (TAIR:AT2G20990.1); Has 7272 Blast hits to 5651 proteins in 270 species: Archae - 0; Bacteria - 0; Metazoa - 4705; Fungi - 871; Plants - 1207; Viruses - 0; Other Eukaryotes - 489 (source: NCBI BLink).;Calcium-dependent lipid-binding (CaLB domain) family protein transcript=eq;prot=eq; + 1 No
AT2G20990 ath Encodes a plasma membrane localized protein with similarity to synaptotagmins, a class of membrane trafficking proteins. SYT1 is expressed in all tissues. Loss of function mutations show hypersensitivity to NaCl and electrolyte leakage from the plasma membrane. SYT1 also affects calcium dependent freezing tolerance. SYT1 probably plays a role in membrane repair such as membrane resealing after freezing induced damage. Regulates endocytosis endosome recycling at the plasma membrane, but not membrane traffic along the secretory pathway.;synaptotagmin A transcript=eq;prot=eq; + 2 No
AT2G21010 ath C2 domain-containing protein. Possible pseudogene of AT2G20990.;Calcium-dependent lipid-binding (CaLB domain) family protein transcript=eq;prot=eq; + 2 No
AT2G21040 ath C2 domain-containing protein. Possible pseudogene of AT2G20990.;Calcium-dependent lipid-binding (CaLB domain) family protein transcript=eq;prot=eq; + 2 No
AT3G60950 ath C2 calcium/lipid-binding endonuclease/exonuclease/phosphatase; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: cultured cell; CONTAINS InterPro DOMAIN/s: C2 membrane targeting protein (InterPro:IPR018029), C2 calcium/lipid-binding domain, CaLB (InterPro:IPR008973), Endonuclease/exonuclease/phosphatase (InterPro:IPR005135), C2 calcium-dependent membrane targeting (InterPro:IPR000008); BEST Arabidopsis thaliana protein match is: Calcium-dependent lipid-binding (CaLB domain) family protein (TAIR:AT3G61030.1); Has 4425 Blast hits to 4326 proteins in 1442 species: Archae - 111; Bacteria - 2322; Metazoa - 578; Fungi - 318; Plants - 452; Viruses - 0; Other Eukaryotes - 644 (source: NCBI BLink).;C2 calcium/lipid-binding endonuclease/exonuclease/phosphatase transcript=eq;prot=eq; + 3 No
AT3G61030 ath Calcium-dependent lipid-binding (CaLB domain) family protein; CONTAINS InterPro DOMAIN/s: C2 membrane targeting protein (InterPro:IPR018029), C2 calcium/lipid-binding domain, CaLB (InterPro:IPR008973), C2 calcium-dependent membrane targeting (InterPro:IPR000008); BEST Arabidopsis thaliana protein match is: C2 calcium/lipid-binding endonuclease/exonuclease/phosphatase (TAIR:AT3G60950.1); Has 4067 Blast hits to 3968 proteins in 1320 species: Archae - 109; Bacteria - 2078; Metazoa - 577; Fungi - 310; Plants - 450; Viruses - 0; Other Eukaryotes - 543 (source: NCBI BLink).;Calcium-dependent lipid-binding (CaLB domain) family protein transcript=eq;prot=eq; + 3 No
AT3G61050 ath NTMC2T4; FUNCTIONS IN: lipid binding; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: male gametophyte, cultured cell, callus, pollen tube; EXPRESSED DURING: M germinated pollen stage; CONTAINS InterPro DOMAIN/s: C2 membrane targeting protein (InterPro:IPR018029), C2 calcium/lipid-binding domain, CaLB (InterPro:IPR008973), C2 region (InterPro:IPR020477), C2 calcium-dependent membrane targeting (InterPro:IPR000008); BEST Arabidopsis thaliana protein match is: Calcium-dependent lipid-binding (CaLB domain) family protein (TAIR:AT3G61030.1); Has 7034 Blast hits to 5237 proteins in 360 species: Archae - 8; Bacteria - 265; Metazoa - 4095; Fungi - 909; Plants - 1092; Viruses - 2; Other Eukaryotes - 663 (source: NCBI BLink).;Calcium-dependent lipid-binding (CaLB domain) family protein transcript=eq;prot=eq; + 3 No
AT5G04220 ath SYTC; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: C2 membrane targeting protein (InterPro:IPR018029), C2 calcium/lipid-binding domain, CaLB (InterPro:IPR008973), C2 region (InterPro:IPR020477), C2 calcium-dependent membrane targeting (InterPro:IPR000008); BEST Arabidopsis thaliana protein match is: synaptotagmin A (TAIR:AT2G20990.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).;Calcium-dependent lipid-binding (CaLB domain) family protein transcript=eq;prot=eq; - 5 No
AT5G11100 ath SYTD; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 4 anthesis, C globular stage, petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: C2 membrane targeting protein (InterPro:IPR018029), C2 calcium/lipid-binding domain, CaLB (InterPro:IPR008973), C2 calcium-dependent membrane targeting (InterPro:IPR000008); BEST Arabidopsis thaliana protein match is: Calcium-dependent lipid-binding (CaLB domain) family protein (TAIR:AT1G05500.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).;Calcium-dependent lipid-binding (CaLB domain) family protein transcript=ne;prot=eq; + 5 No
BD1G33150 bdi ubiquitin-protein ligase activity, beta-2 adrenergic receptor binding (Blast2GO) pid=Bradi1g33150.1;tid=Bradi1g33150.1;GeneName=Bradi1g33150;transcript=eq;prot=eq + Bd1 No
BD1G52680 bdi phospholipase A2 activity, ubiquitin-protein ligase activity, beta-2 adrenergic receptor binding (Blast2GO) pid=Bradi1g52680.1;tid=Bradi1g52680.1;GeneName=Bradi1g52680;transcript=eq;prot=eq - Bd1 No
BD1G67950 bdi calcium-dependent phospholipase A2 activity (Blast2GO) pid=Bradi1g67950.1;tid=Bradi1g67950.1;GeneName=Bradi1g67950;transcript=eq;prot=eq + Bd1 No
BD3G12250 bdi ubiquitin-protein ligase activity, beta-2 adrenergic receptor binding (Blast2GO) pid=Bradi3g12250.3;tid=Bradi3g12250.3;GeneName=Bradi3g12250;transcript=eq;prot=eq + Bd3 No
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