Gene family 
- Id
- HOM000452
- Method
- BLASTP E_value=1e-05 MCL_I=2
- Sequences
- Sub-families
-
ORTHO000667 (50 genes in 22 species)
ORTHO000731 (48 genes in 24 species)
ORTHO002238 (33 genes in 20 species)
View all sub-families (12)
- Keywords
-
Overview of gene family content
- aly
- Arabidopsis lyrata (6 genes)
- ath
- Arabidopsis thaliana (10 genes)
- bdi
- Brachypodium distachyon (7 genes)
- cpa
- Carica papaya (7 genes)
- cre
- Chlamydomonas reinhardtii (3 genes)
- fve
- Fragaria vesca (12 genes)
- gma
- Glycine max (13 genes)
- lja
- Lotus japonicus (12 genes)
- mdo
- Malus domestica (14 genes)
- mes
- Manihot esculenta (10 genes)
- mrcc299
- Micromonas sp. RCC299 (6 genes)
- mtr
- Medicago truncatula (10 genes)
- olu
- Ostreococcus lucimarinus (7 genes)
- osa
- Oryza sativa ssp. japonica (9 genes)
- osaindica
- Oryza sativa ssp. indica (10 genes)
- ota
- Ostreococcus tauri (4 genes)
- ppa
- Physcomitrella patens (8 genes)
- ptr
- Populus trichocarpa (12 genes)
- rco
- Ricinus communis (7 genes)
- sbi
- Sorghum bicolor (8 genes)
- smo
- Selaginella moellendorffii (7 genes)
- tca
- Theobroma cacao (8 genes)
- vca
- Volvox carteri (3 genes)
- vvi
- Vitis vinifera (12 genes)
- zma
- Zea mays (8 genes)
The gene family HOM000452 has 213 genes in 25 species (16 outlier genes).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
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Index of genes with 1 constraints:
- gene family : HOM000452
Page 1 of 11, showing 20 records out of 213 total, starting on record 1, ending on 20
| gene_id | species | description | comment | strand | chr | outlier |
|---|---|---|---|---|---|---|
| AL1G05000 | aly | name=fgenesh2_kg.1__504__AT1G05500.1;pid=470550;prot=eq;tid=470550 | + | scaffold_1 | No | |
| AL1G21160 | aly | name=fgenesh1_pm.C_scaffold_1001716;pid=312936;prot=eq;tid=312936 | + | scaffold_1 | No | |
| AL4G00120 | aly | name=fgenesh2_kg.4__11__AT2G20990.1;pid=480951;prot=eq;tid=480951 | + | scaffold_4 | No | |
| AL5G31670 | aly | name=fgenesh2_kg.5__2565__AT3G61050.2;pid=486573;prot=eq;tid=486573 | + | scaffold_5 | No | |
| AL6G03550 | aly | name=fgenesh1_pm.C_scaffold_6000289;pid=325069;prot=eq;tid=325069 | - | scaffold_6 | No | |
| AL6G10880 | aly | name=fgenesh1_pm.C_scaffold_6000863;pid=325643;prot=eq;tid=325643 | + | scaffold_6 | No | |
| AT1G05500 | ath | Encodes a endomembrane-localized synaptotagmin. Synaptotagmin family proteins are calcium sensors that regulate exocytosis in mammalian cells.;Calcium-dependent lipid-binding (CaLB domain) family protein | transcript=eq;prot=eq; | + | 1 | No |
| AT1G20080 | ath | SYTB; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: C2 membrane targeting protein (InterPro:IPR018029), C2 calcium/lipid-binding domain, CaLB (InterPro:IPR008973), C2 region (InterPro:IPR020477), C2 calcium-dependent membrane targeting (InterPro:IPR000008); BEST Arabidopsis thaliana protein match is: synaptotagmin A (TAIR:AT2G20990.1); Has 7272 Blast hits to 5651 proteins in 270 species: Archae - 0; Bacteria - 0; Metazoa - 4705; Fungi - 871; Plants - 1207; Viruses - 0; Other Eukaryotes - 489 (source: NCBI BLink).;Calcium-dependent lipid-binding (CaLB domain) family protein | transcript=eq;prot=eq; | + | 1 | No |
| AT2G20990 | ath | Encodes a plasma membrane localized protein with similarity to synaptotagmins, a class of membrane trafficking proteins. SYT1 is expressed in all tissues. Loss of function mutations show hypersensitivity to NaCl and electrolyte leakage from the plasma membrane. SYT1 also affects calcium dependent freezing tolerance. SYT1 probably plays a role in membrane repair such as membrane resealing after freezing induced damage. Regulates endocytosis endosome recycling at the plasma membrane, but not membrane traffic along the secretory pathway.;synaptotagmin A | transcript=eq;prot=eq; | + | 2 | No |
| AT2G21010 | ath | C2 domain-containing protein. Possible pseudogene of AT2G20990.;Calcium-dependent lipid-binding (CaLB domain) family protein | transcript=eq;prot=eq; | + | 2 | No |
| AT2G21040 | ath | C2 domain-containing protein. Possible pseudogene of AT2G20990.;Calcium-dependent lipid-binding (CaLB domain) family protein | transcript=eq;prot=eq; | + | 2 | No |
| AT3G60950 | ath | C2 calcium/lipid-binding endonuclease/exonuclease/phosphatase; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: cultured cell; CONTAINS InterPro DOMAIN/s: C2 membrane targeting protein (InterPro:IPR018029), C2 calcium/lipid-binding domain, CaLB (InterPro:IPR008973), Endonuclease/exonuclease/phosphatase (InterPro:IPR005135), C2 calcium-dependent membrane targeting (InterPro:IPR000008); BEST Arabidopsis thaliana protein match is: Calcium-dependent lipid-binding (CaLB domain) family protein (TAIR:AT3G61030.1); Has 4425 Blast hits to 4326 proteins in 1442 species: Archae - 111; Bacteria - 2322; Metazoa - 578; Fungi - 318; Plants - 452; Viruses - 0; Other Eukaryotes - 644 (source: NCBI BLink).;C2 calcium/lipid-binding endonuclease/exonuclease/phosphatase | transcript=eq;prot=eq; | + | 3 | No |
| AT3G61030 | ath | Calcium-dependent lipid-binding (CaLB domain) family protein; CONTAINS InterPro DOMAIN/s: C2 membrane targeting protein (InterPro:IPR018029), C2 calcium/lipid-binding domain, CaLB (InterPro:IPR008973), C2 calcium-dependent membrane targeting (InterPro:IPR000008); BEST Arabidopsis thaliana protein match is: C2 calcium/lipid-binding endonuclease/exonuclease/phosphatase (TAIR:AT3G60950.1); Has 4067 Blast hits to 3968 proteins in 1320 species: Archae - 109; Bacteria - 2078; Metazoa - 577; Fungi - 310; Plants - 450; Viruses - 0; Other Eukaryotes - 543 (source: NCBI BLink).;Calcium-dependent lipid-binding (CaLB domain) family protein | transcript=eq;prot=eq; | + | 3 | No |
| AT3G61050 | ath | NTMC2T4; FUNCTIONS IN: lipid binding; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: male gametophyte, cultured cell, callus, pollen tube; EXPRESSED DURING: M germinated pollen stage; CONTAINS InterPro DOMAIN/s: C2 membrane targeting protein (InterPro:IPR018029), C2 calcium/lipid-binding domain, CaLB (InterPro:IPR008973), C2 region (InterPro:IPR020477), C2 calcium-dependent membrane targeting (InterPro:IPR000008); BEST Arabidopsis thaliana protein match is: Calcium-dependent lipid-binding (CaLB domain) family protein (TAIR:AT3G61030.1); Has 7034 Blast hits to 5237 proteins in 360 species: Archae - 8; Bacteria - 265; Metazoa - 4095; Fungi - 909; Plants - 1092; Viruses - 2; Other Eukaryotes - 663 (source: NCBI BLink).;Calcium-dependent lipid-binding (CaLB domain) family protein | transcript=eq;prot=eq; | + | 3 | No |
| AT5G04220 | ath | SYTC; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: C2 membrane targeting protein (InterPro:IPR018029), C2 calcium/lipid-binding domain, CaLB (InterPro:IPR008973), C2 region (InterPro:IPR020477), C2 calcium-dependent membrane targeting (InterPro:IPR000008); BEST Arabidopsis thaliana protein match is: synaptotagmin A (TAIR:AT2G20990.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).;Calcium-dependent lipid-binding (CaLB domain) family protein | transcript=eq;prot=eq; | - | 5 | No |
| AT5G11100 | ath | SYTD; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 4 anthesis, C globular stage, petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: C2 membrane targeting protein (InterPro:IPR018029), C2 calcium/lipid-binding domain, CaLB (InterPro:IPR008973), C2 calcium-dependent membrane targeting (InterPro:IPR000008); BEST Arabidopsis thaliana protein match is: Calcium-dependent lipid-binding (CaLB domain) family protein (TAIR:AT1G05500.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).;Calcium-dependent lipid-binding (CaLB domain) family protein | transcript=ne;prot=eq; | + | 5 | No |
| BD1G33150 | bdi | ubiquitin-protein ligase activity, beta-2 adrenergic receptor binding (Blast2GO) | pid=Bradi1g33150.1;tid=Bradi1g33150.1;GeneName=Bradi1g33150;transcript=eq;prot=eq | + | Bd1 | No |
| BD1G52680 | bdi | phospholipase A2 activity, ubiquitin-protein ligase activity, beta-2 adrenergic receptor binding (Blast2GO) | pid=Bradi1g52680.1;tid=Bradi1g52680.1;GeneName=Bradi1g52680;transcript=eq;prot=eq | - | Bd1 | No |
| BD1G67950 | bdi | calcium-dependent phospholipase A2 activity (Blast2GO) | pid=Bradi1g67950.1;tid=Bradi1g67950.1;GeneName=Bradi1g67950;transcript=eq;prot=eq | + | Bd1 | No |
| BD3G12250 | bdi | ubiquitin-protein ligase activity, beta-2 adrenergic receptor binding (Blast2GO) | pid=Bradi3g12250.3;tid=Bradi3g12250.3;GeneName=Bradi3g12250;transcript=eq;prot=eq | + | Bd3 | No |