Gene family  

Sub-families
ORTHO003550 (29 genes in 24 species)
ORTHO005177 (26 genes in 20 species)
ORTHO008373 (21 genes in 16 species)
View all sub-families (20)
 
Keywords


Overview of gene family content




aly
Arabidopsis lyrata (9 genes)
ath
Arabidopsis thaliana (9 genes)
bdi
Brachypodium distachyon (9 genes)
cpa
Carica papaya (8 genes)
cre
Chlamydomonas reinhardtii (1 gene)
fve
Fragaria vesca (7 genes)
gma
Glycine max (26 genes)
lja
Lotus japonicus (11 genes)
mdo
Malus domestica (20 genes)
mes
Manihot esculenta (12 genes)
mtr
Medicago truncatula (12 genes)
olu
Ostreococcus lucimarinus (1 gene)
osa
Oryza sativa ssp. japonica (10 genes)
osaindica
Oryza sativa ssp. indica (11 genes)
ota
Ostreococcus tauri (1 gene)
ppa
Physcomitrella patens (4 genes)
ptr
Populus trichocarpa (13 genes)
rco
Ricinus communis (6 genes)
sbi
Sorghum bicolor (9 genes)
smo
Selaginella moellendorffii (7 genes)
tca
Theobroma cacao (7 genes)
vca
Volvox carteri (1 gene)
vvi
Vitis vinifera (7 genes)
zma
Zea mays (14 genes)



The gene family HOM000448 has 215 genes in 24 species (11 outlier genes).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
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Index of genes with 1 constraints:

Page 1 of 11, showing 20 records out of 215 total, starting on record 1, ending on 20

gene_id species description comment strand chr outlier
AL1G07930 aly name=fgenesh1_pg.C_scaffold_1000684;pid=334119;prot=eq;tid=334119 - scaffold_1 No
AL1G13940 aly name=fgenesh2_kg.1__1438__AT1G13290.1;pid=471484;prot=eq;tid=471484 - scaffold_1 No
AL1G36750 aly name=fgenesh2_kg.1__3606__AT1G34790.1;pid=473652;prot=eq;tid=473652 + scaffold_1 No
AL1G45880 aly name=scaffold_104878.1;pid=892084;prot=eq;tid=923597 - scaffold_1 No
AL3G22930 aly name=fgenesh1_pm.C_scaffold_3001853;pid=318837;prot=eq;tid=318837 - scaffold_3 No
AL3G22940 aly name=Al_scaffold_0003_2238;pid=873597;prot=eq;tid=905110 - scaffold_3 Yes
AL5G11840 aly name=fgenesh2_kg.5__829__AT3G44160.1;pid=484837;prot=eq;tid=484837 - scaffold_5 No
AL5G28160 aly name=fgenesh2_kg.5__2209__AT3G57670.1;pid=486217;prot=eq;tid=486217 + scaffold_5 No
AL6G19900 aly name=scaffold_602056.1;pid=909999;prot=eq;tid=941512 + scaffold_6 No
AT1G08290 ath WIP domain protein 3 (WIP3); CONTAINS InterPro DOMAIN/s: Zinc finger, C2H2-like (InterPro:IPR015880), Zinc finger, C2H2-type (InterPro:IPR007087); BEST Arabidopsis thaliana protein match is: WIP domain protein 5 (TAIR:AT1G51220.1); Has 40394 Blast hits to 17903 proteins in 213 species: Archae - 0; Bacteria - 0; Metazoa - 38493; Fungi - 119; Plants - 685; Viruses - 0; Other Eukaryotes - 1097 (source: NCBI BLink).;WIP domain protein 3 transcript=eq;prot=eq; - 1 No
AT1G13290 ath Encodes a putative zinc finger protein (C2H2 family, type IIIA, subclass A1d) that has a WIP domain. Seedlings with mutations in DOT5 have a misaligned venation defect in their leaves and cotyledons. Additional developmental abnormalities, such as elongated petioles and aberrant phyllotaxy suggest that DOT5 is required for normal shoot and root development.;C2H2-like zinc finger protein transcript=eq;prot=eq; - 1 No
AT1G34790 ath Encodes a zinc finger protein; involved in photomorphogenesis, flavonoid biosynthesis, flower and seed development.;C2H2 and C2HC zinc fingers superfamily protein transcript=eq;prot=eq; + 1 No
AT1G51220 ath WIP domain protein 5 (WIP5); CONTAINS InterPro DOMAIN/s: Zinc finger, C2H2-like (InterPro:IPR015880), Zinc finger, C2H2-type (InterPro:IPR007087); BEST Arabidopsis thaliana protein match is: WIP domain protein 4 (TAIR:AT3G20880.1); Has 19383 Blast hits to 11948 proteins in 214 species: Archae - 0; Bacteria - 0; Metazoa - 18075; Fungi - 148; Plants - 690; Viruses - 0; Other Eukaryotes - 470 (source: NCBI BLink).;WIP domain protein 5 transcript=eq;prot=eq; - 1 No
AT3G20880 ath WIP domain protein 4 (WIP4); FUNCTIONS IN: sequence-specific DNA binding transcription factor activity, zinc ion binding, nucleic acid binding; INVOLVED IN: regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: central root cap of the primary root, quiescent center; EXPRESSED DURING: seedling growth; CONTAINS InterPro DOMAIN/s: Zinc finger, C2H2-like (InterPro:IPR015880), Zinc finger, C2H2-type (InterPro:IPR007087); BEST Arabidopsis thaliana protein match is: WIP domain protein 5 (TAIR:AT1G51220.1); Has 13660 Blast hits to 9603 proteins in 184 species: Archae - 0; Bacteria - 0; Metazoa - 12537; Fungi - 114; Plants - 690; Viruses - 0; Other Eukaryotes - 319 (source: NCBI BLink).;WIP domain protein 4 transcript=eq;prot=eq; - 3 No
AT3G44160 ath Outer membrane OMP85 family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: outer membrane; CONTAINS InterPro DOMAIN/s: Bacterial surface antigen (D15) (InterPro:IPR000184); BEST Arabidopsis thaliana protein match is: Outer membrane OMP85 family protein (TAIR:AT3G48620.1); Has 794 Blast hits to 794 proteins in 257 species: Archae - 0; Bacteria - 513; Metazoa - 2; Fungi - 0; Plants - 147; Viruses - 0; Other Eukaryotes - 132 (source: NCBI BLink).;Outer membrane OMP85 family protein transcript=eq;prot=eq; - 3 No
AT3G48620 ath Outer membrane OMP85 family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: outer membrane; CONTAINS InterPro DOMAIN/s: Bacterial surface antigen (D15) (InterPro:IPR000184); BEST Arabidopsis thaliana protein match is: Outer membrane OMP85 family protein (TAIR:AT3G44160.1); Has 503 Blast hits to 503 proteins in 137 species: Archae - 0; Bacteria - 247; Metazoa - 0; Fungi - 0; Plants - 144; Viruses - 0; Other Eukaryotes - 112 (source: NCBI BLink).;Outer membrane OMP85 family protein transcript=eq;prot=eq; + 3 No
AT3G57670 ath NO TRANSMITTING TRACT (NTT); CONTAINS InterPro DOMAIN/s: Zinc finger, C2H2-like (InterPro:IPR015880), Zinc finger, C2H2-type (InterPro:IPR007087); BEST Arabidopsis thaliana protein match is: WIP domain protein 4 (TAIR:AT3G20880.1); Has 16303 Blast hits to 11155 proteins in 263 species: Archae - 2; Bacteria - 36; Metazoa - 14565; Fungi - 231; Plants - 853; Viruses - 60; Other Eukaryotes - 556 (source: NCBI BLink).;C2H2-type zinc finger family protein transcript=eq;prot=eq; + 3 No
AT5G19620 ath AtOEP80 is paralog to the chloroplastic protein translocation channel Toc75. Mutations in this locus result in embryo lethality.;outer envelope protein of 80 kDa transcript=eq;prot=eq; + 5 No
BD1G36067 bdi pid=Bradi1g36067.1;tid=Bradi1g36067.1;GeneName=Bradi1g36067;transcript=eq;prot=eq - Bd1 No
BD2G20290 bdi pid=Bradi2g20290.1;tid=Bradi2g20290.1;GeneName=Bradi2g20290;transcript=eq;prot=eq + Bd2 No
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