Gene family 
- Id
- HOM000448
- Method
- BLASTP E_value=1e-05 MCL_I=2
- Sequences
- Sub-families
-
ORTHO003550 (29 genes in 24 species)
ORTHO005177 (26 genes in 20 species)
ORTHO008373 (21 genes in 16 species)
View all sub-families (20)
- Keywords
-
Overview of gene family content
- aly
- Arabidopsis lyrata (9 genes)
- ath
- Arabidopsis thaliana (9 genes)
- bdi
- Brachypodium distachyon (9 genes)
- cpa
- Carica papaya (8 genes)
- cre
- Chlamydomonas reinhardtii (1 gene)
- fve
- Fragaria vesca (7 genes)
- gma
- Glycine max (26 genes)
- lja
- Lotus japonicus (11 genes)
- mdo
- Malus domestica (20 genes)
- mes
- Manihot esculenta (12 genes)
- mtr
- Medicago truncatula (12 genes)
- olu
- Ostreococcus lucimarinus (1 gene)
- osa
- Oryza sativa ssp. japonica (10 genes)
- osaindica
- Oryza sativa ssp. indica (11 genes)
- ota
- Ostreococcus tauri (1 gene)
- ppa
- Physcomitrella patens (4 genes)
- ptr
- Populus trichocarpa (13 genes)
- rco
- Ricinus communis (6 genes)
- sbi
- Sorghum bicolor (9 genes)
- smo
- Selaginella moellendorffii (7 genes)
- tca
- Theobroma cacao (7 genes)
- vca
- Volvox carteri (1 gene)
- vvi
- Vitis vinifera (7 genes)
- zma
- Zea mays (14 genes)
The gene family HOM000448 has 215 genes in 24 species (11 outlier genes).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
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Index of genes with 1 constraints:
- gene family : HOM000448
Page 1 of 11, showing 20 records out of 215 total, starting on record 1, ending on 20
| gene_id | species | description | comment | strand | chr | outlier |
|---|---|---|---|---|---|---|
| AL1G07930 | aly | name=fgenesh1_pg.C_scaffold_1000684;pid=334119;prot=eq;tid=334119 | - | scaffold_1 | No | |
| AL1G13940 | aly | name=fgenesh2_kg.1__1438__AT1G13290.1;pid=471484;prot=eq;tid=471484 | - | scaffold_1 | No | |
| AL1G36750 | aly | name=fgenesh2_kg.1__3606__AT1G34790.1;pid=473652;prot=eq;tid=473652 | + | scaffold_1 | No | |
| AL1G45880 | aly | name=scaffold_104878.1;pid=892084;prot=eq;tid=923597 | - | scaffold_1 | No | |
| AL3G22930 | aly | name=fgenesh1_pm.C_scaffold_3001853;pid=318837;prot=eq;tid=318837 | - | scaffold_3 | No | |
| AL3G22940 | aly | name=Al_scaffold_0003_2238;pid=873597;prot=eq;tid=905110 | - | scaffold_3 | Yes | |
| AL5G11840 | aly | name=fgenesh2_kg.5__829__AT3G44160.1;pid=484837;prot=eq;tid=484837 | - | scaffold_5 | No | |
| AL5G28160 | aly | name=fgenesh2_kg.5__2209__AT3G57670.1;pid=486217;prot=eq;tid=486217 | + | scaffold_5 | No | |
| AL6G19900 | aly | name=scaffold_602056.1;pid=909999;prot=eq;tid=941512 | + | scaffold_6 | No | |
| AT1G08290 | ath | WIP domain protein 3 (WIP3); CONTAINS InterPro DOMAIN/s: Zinc finger, C2H2-like (InterPro:IPR015880), Zinc finger, C2H2-type (InterPro:IPR007087); BEST Arabidopsis thaliana protein match is: WIP domain protein 5 (TAIR:AT1G51220.1); Has 40394 Blast hits to 17903 proteins in 213 species: Archae - 0; Bacteria - 0; Metazoa - 38493; Fungi - 119; Plants - 685; Viruses - 0; Other Eukaryotes - 1097 (source: NCBI BLink).;WIP domain protein 3 | transcript=eq;prot=eq; | - | 1 | No |
| AT1G13290 | ath | Encodes a putative zinc finger protein (C2H2 family, type IIIA, subclass A1d) that has a WIP domain. Seedlings with mutations in DOT5 have a misaligned venation defect in their leaves and cotyledons. Additional developmental abnormalities, such as elongated petioles and aberrant phyllotaxy suggest that DOT5 is required for normal shoot and root development.;C2H2-like zinc finger protein | transcript=eq;prot=eq; | - | 1 | No |
| AT1G34790 | ath | Encodes a zinc finger protein; involved in photomorphogenesis, flavonoid biosynthesis, flower and seed development.;C2H2 and C2HC zinc fingers superfamily protein | transcript=eq;prot=eq; | + | 1 | No |
| AT1G51220 | ath | WIP domain protein 5 (WIP5); CONTAINS InterPro DOMAIN/s: Zinc finger, C2H2-like (InterPro:IPR015880), Zinc finger, C2H2-type (InterPro:IPR007087); BEST Arabidopsis thaliana protein match is: WIP domain protein 4 (TAIR:AT3G20880.1); Has 19383 Blast hits to 11948 proteins in 214 species: Archae - 0; Bacteria - 0; Metazoa - 18075; Fungi - 148; Plants - 690; Viruses - 0; Other Eukaryotes - 470 (source: NCBI BLink).;WIP domain protein 5 | transcript=eq;prot=eq; | - | 1 | No |
| AT3G20880 | ath | WIP domain protein 4 (WIP4); FUNCTIONS IN: sequence-specific DNA binding transcription factor activity, zinc ion binding, nucleic acid binding; INVOLVED IN: regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: central root cap of the primary root, quiescent center; EXPRESSED DURING: seedling growth; CONTAINS InterPro DOMAIN/s: Zinc finger, C2H2-like (InterPro:IPR015880), Zinc finger, C2H2-type (InterPro:IPR007087); BEST Arabidopsis thaliana protein match is: WIP domain protein 5 (TAIR:AT1G51220.1); Has 13660 Blast hits to 9603 proteins in 184 species: Archae - 0; Bacteria - 0; Metazoa - 12537; Fungi - 114; Plants - 690; Viruses - 0; Other Eukaryotes - 319 (source: NCBI BLink).;WIP domain protein 4 | transcript=eq;prot=eq; | - | 3 | No |
| AT3G44160 | ath | Outer membrane OMP85 family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: outer membrane; CONTAINS InterPro DOMAIN/s: Bacterial surface antigen (D15) (InterPro:IPR000184); BEST Arabidopsis thaliana protein match is: Outer membrane OMP85 family protein (TAIR:AT3G48620.1); Has 794 Blast hits to 794 proteins in 257 species: Archae - 0; Bacteria - 513; Metazoa - 2; Fungi - 0; Plants - 147; Viruses - 0; Other Eukaryotes - 132 (source: NCBI BLink).;Outer membrane OMP85 family protein | transcript=eq;prot=eq; | - | 3 | No |
| AT3G48620 | ath | Outer membrane OMP85 family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: outer membrane; CONTAINS InterPro DOMAIN/s: Bacterial surface antigen (D15) (InterPro:IPR000184); BEST Arabidopsis thaliana protein match is: Outer membrane OMP85 family protein (TAIR:AT3G44160.1); Has 503 Blast hits to 503 proteins in 137 species: Archae - 0; Bacteria - 247; Metazoa - 0; Fungi - 0; Plants - 144; Viruses - 0; Other Eukaryotes - 112 (source: NCBI BLink).;Outer membrane OMP85 family protein | transcript=eq;prot=eq; | + | 3 | No |
| AT3G57670 | ath | NO TRANSMITTING TRACT (NTT); CONTAINS InterPro DOMAIN/s: Zinc finger, C2H2-like (InterPro:IPR015880), Zinc finger, C2H2-type (InterPro:IPR007087); BEST Arabidopsis thaliana protein match is: WIP domain protein 4 (TAIR:AT3G20880.1); Has 16303 Blast hits to 11155 proteins in 263 species: Archae - 2; Bacteria - 36; Metazoa - 14565; Fungi - 231; Plants - 853; Viruses - 60; Other Eukaryotes - 556 (source: NCBI BLink).;C2H2-type zinc finger family protein | transcript=eq;prot=eq; | + | 3 | No |
| AT5G19620 | ath | AtOEP80 is paralog to the chloroplastic protein translocation channel Toc75. Mutations in this locus result in embryo lethality.;outer envelope protein of 80 kDa | transcript=eq;prot=eq; | + | 5 | No |
| BD1G36067 | bdi | pid=Bradi1g36067.1;tid=Bradi1g36067.1;GeneName=Bradi1g36067;transcript=eq;prot=eq | - | Bd1 | No | |
| BD2G20290 | bdi | pid=Bradi2g20290.1;tid=Bradi2g20290.1;GeneName=Bradi2g20290;transcript=eq;prot=eq | + | Bd2 | No |