Gene family  

Sub-families
ORTHO000559 (54 genes in 12 species)
ORTHO012143 (16 genes in 5 species)
ORTHO014196 (12 genes in 3 species)
View all sub-families (19)
 
Keywords


Overview of gene family content




aly
Arabidopsis lyrata (2 genes)
ath
Arabidopsis thaliana (7 genes)
bdi
Brachypodium distachyon (4 genes)
fve
Fragaria vesca (19 genes)
gma
Glycine max (7 genes)
lja
Lotus japonicus (4 genes)
mdo
Malus domestica (40 genes)
mtr
Medicago truncatula (19 genes)
osa
Oryza sativa ssp. japonica (7 genes)
osaindica
Oryza sativa ssp. indica (14 genes)
ptr
Populus trichocarpa (1 gene)
rco
Ricinus communis (1 gene)
sbi
Sorghum bicolor (42 genes)
tca
Theobroma cacao (12 genes)
zma
Zea mays (37 genes)



The gene family HOM000446 has 216 genes in 15 species (21 outlier genes).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
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Index of genes with 1 constraints:

Page 1 of 11, showing 20 records out of 216 total, starting on record 1, ending on 20

gene_id species description comment strand chr outlier
AL1G43590 aly name=fgenesh1_pm.C_scaffold_1003147;pid=314367;prot=eq;tid=314367 - scaffold_1 No
AL3G08710 aly name=fgenesh1_pm.C_scaffold_3000683;pid=317667;prot=eq;tid=317667 + scaffold_3 No
AT1G35150 ath General transcription factor 2-related zinc finger protein; BEST Arabidopsis thaliana protein match is: hAT family dimerisation domain (TAIR:AT2G06500.1); Has 572 Blast hits to 482 proteins in 32 species: Archae - 0; Bacteria - 0; Metazoa - 312; Fungi - 0; Plants - 260; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).;General transcription factor 2-related zinc finger protein transcript=eq;prot=eq; - 1 No
AT2G06500 ath hAT family dimerisation domain; FUNCTIONS IN: protein dimerization activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: HAT dimerisation (InterPro:IPR008906); BEST Arabidopsis thaliana protein match is: General transcription factor 2-related zinc finger protein (TAIR:AT1G35150.1); Has 1024 Blast hits to 763 proteins in 58 species: Archae - 2; Bacteria - 6; Metazoa - 608; Fungi - 2; Plants - 377; Viruses - 0; Other Eukaryotes - 29 (source: NCBI BLink).;hAT family dimerisation domain transcript=eq;prot=eq; - 2 No
AT2G16040 ath hAT dimerisation domain-containing protein / transposase-related; FUNCTIONS IN: protein dimerization activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: male gametophyte, pollen tube; EXPRESSED DURING: M germinated pollen stage; CONTAINS InterPro DOMAIN/s: HAT dimerisation (InterPro:IPR008906); BEST Arabidopsis thaliana protein match is: hAT family dimerisation domain (TAIR:AT2G06500.1); Has 701 Blast hits to 553 proteins in 42 species: Archae - 0; Bacteria - 0; Metazoa - 491; Fungi - 0; Plants - 207; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink).;hAT dimerisation domain-containing protein / transposase-related transcript=eq;prot=eq; + 2 No
AT2G19960 ath hAT family dimerisation domain; FUNCTIONS IN: protein dimerization activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: HAT dimerisation (InterPro:IPR008906); BEST Arabidopsis thaliana protein match is: hAT family dimerisation domain (TAIR:AT2G06500.1); Has 483 Blast hits to 479 proteins in 38 species: Archae - 0; Bacteria - 0; Metazoa - 319; Fungi - 0; Plants - 163; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).;hAT family dimerisation domain transcript=eq;prot=eq; + 2 No
AT3G29638 ath General transcription factor 2-related zinc finger protein; BEST Arabidopsis thaliana protein match is: TTF-type zinc finger protein with HAT dimerisation domain (TAIR:AT4G10200.1); Has 481 Blast hits to 402 proteins in 22 species: Archae - 0; Bacteria - 0; Metazoa - 208; Fungi - 0; Plants - 273; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).;General transcription factor 2-related zinc finger protein transcript=eq;prot=eq; + 3 No
AT4G10200 ath TTF-type zinc finger protein with HAT dimerisation domain; FUNCTIONS IN: protein dimerization activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: HAT dimerisation (InterPro:IPR008906), Zinc finger, TTF-type (InterPro:IPR006580); BEST Arabidopsis thaliana protein match is: hAT dimerisation domain-containing protein / transposase-related (TAIR:AT2G16040.1); Has 986 Blast hits to 895 proteins in 48 species: Archae - 0; Bacteria - 2; Metazoa - 584; Fungi - 0; Plants - 391; Viruses - 0; Other Eukaryotes - 9 (source: NCBI BLink).;TTF-type zinc finger protein with HAT dimerisation domain transcript=eq;prot=eq; + 4 No
AT5G35475 ath General transcription factor 2-related zinc finger protein; BEST Arabidopsis thaliana protein match is: hAT family dimerisation domain (TAIR:AT2G06500.1); Has 175 Blast hits to 175 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 114; Fungi - 0; Plants - 61; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).;General transcription factor 2-related zinc finger protein transcript=eq;prot=eq; - 5 No
BD2G06320 bdi pid=Bradi2g06320.1;tid=Bradi2g06320.1;GeneName=Bradi2g06320;transcript=eq;prot=eq - Bd2 No
BD2G17187 bdi pid=Bradi2g17187.1;tid=Bradi2g17187.1;GeneName=Bradi2g17187;transcript=eq;prot=eq - Bd2 No
BD5G15111 bdi pid=Bradi5g15111.1;tid=Bradi5g15111.1;GeneName=Bradi5g15111;transcript=eq;prot=eq + Bd5 No
BD5G15977 bdi pid=Bradi5g15977.1;tid=Bradi5g15977.1;GeneName=Bradi5g15977;transcript=eq;prot=eq - Bd5 No
FV0G58810 fve Protein SDA1 homolog (probable) transcript=eq;prot=eq;pid=gene33351 - scf0511587 Yes
FV1G10080 fve 12-oxophytodienoate reductase 3 (OPDA-reductase 3) (similar to) transcript=eq;prot=eq;pid=gene12479 + LG1 No
FV1G12620 fve Zinc finger MYM-type protein 1 (probable) transcript=eq;prot=eq;pid=gene13090 - LG1 No
FV1G27380 fve Zinc finger MYM-type protein 1 (probable) transcript=eq;prot=eq;pid=gene34152 + LG1 No
FV2G14640 fve Prolipoprotein diacylglyceryl transferase (probable) transcript=eq;prot=eq;pid=gene17599 + LG2 No
FV2G23380 fve Kinesin-like protein CIN8 (probable) transcript=eq;prot=eq;pid=gene01014 - LG2 No
FV2G32110 fve Zinc finger MYM-type protein 5 (probable) transcript=eq;prot=eq;pid=gene02630 - LG2 No
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