Gene family  

Sub-families
ORTHO000872 (45 genes in 24 species)
ORTHO001742 (36 genes in 22 species)
ORTHO005756 (25 genes in 23 species)
View all sub-families (23)
 
Keywords


Overview of gene family content




aly
Arabidopsis lyrata (7 genes)
ath
Arabidopsis thaliana (7 genes)
bdi
Brachypodium distachyon (16 genes)
cpa
Carica papaya (7 genes)
cre
Chlamydomonas reinhardtii (9 genes)
fve
Fragaria vesca (9 genes)
gma
Glycine max (12 genes)
lja
Lotus japonicus (4 genes)
mdo
Malus domestica (21 genes)
mes
Manihot esculenta (7 genes)
mrcc299
Micromonas sp. RCC299 (6 genes)
mtr
Medicago truncatula (4 genes)
olu
Ostreococcus lucimarinus (5 genes)
osa
Oryza sativa ssp. japonica (8 genes)
osaindica
Oryza sativa ssp. indica (7 genes)
ota
Ostreococcus tauri (5 genes)
ppa
Physcomitrella patens (7 genes)
ptr
Populus trichocarpa (16 genes)
rco
Ricinus communis (7 genes)
sbi
Sorghum bicolor (5 genes)
smo
Selaginella moellendorffii (4 genes)
tca
Theobroma cacao (12 genes)
vca
Volvox carteri (10 genes)
vvi
Vitis vinifera (10 genes)
zma
Zea mays (13 genes)



The gene family HOM000437 has 218 genes in 25 species (9 outlier genes).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
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Index of genes with 1 constraints:

Page 1 of 11, showing 20 records out of 218 total, starting on record 1, ending on 20

gene_id species description comment strand chr outlier
AL1G20320 aly name=fgenesh2_kg.1__2117__AT1G19360.1;pid=472163;prot=eq;tid=472163 - scaffold_1 No
AL2G23960 aly name=fgenesh2_kg.2__1780__AT1G75110.1;pid=476650;prot=eq;tid=476650 - scaffold_2 No
AL2G23970 aly name=fgenesh2_kg.2__1781__AT1G75120.1;pid=476651;prot=eq;tid=476651 - scaffold_2 No
AL4G14780 aly name=fgenesh2_kg.4__989__AT2G30170.1;pid=481929;prot=eq;tid=481929 - scaffold_4 No
AL7G07730 aly name=fgenesh1_pm.C_scaffold_7000616;pid=328389;prot=eq;tid=328389 + scaffold_7 No
AL7G26500 aly name=fgenesh2_kg.7__2651__AT4G16580.1;pid=493218;prot=eq;tid=493218 + scaffold_7 No
AL8G33920 aly name=Al_scaffold_0008_3252;pid=886988;prot=eq;tid=918501 + scaffold_8 No
AT1G19360 ath Nucleotide-diphospho-sugar transferase family protein; LOCATED IN: endoplasmic reticulum; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Reticulon (InterPro:IPR003388), Nucleotide-diphospho-sugar transferase, predicted (InterPro:IPR005069); BEST Arabidopsis thaliana protein match is: Nucleotide-diphospho-sugar transferase family protein (TAIR:AT1G75110.1); Has 297 Blast hits to 291 proteins in 24 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 2; Plants - 280; Viruses - 0; Other Eukaryotes - 15 (source: NCBI BLink).;Nucleotide-diphospho-sugar transferase family protein transcript=eq;prot=eq; - 1 No
AT1G75110 ath REDUCED RESIDUAL ARABINOSE 2 (RRA2); LOCATED IN: endoplasmic reticulum; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Reticulon (InterPro:IPR003388), Nucleotide-diphospho-sugar transferase, predicted (InterPro:IPR005069); BEST Arabidopsis thaliana protein match is: Nucleotide-diphospho-sugar transferase family protein (TAIR:AT1G19360.1); Has 313 Blast hits to 307 proteins in 23 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 294; Viruses - 0; Other Eukaryotes - 19 (source: NCBI BLink).;Nucleotide-diphospho-sugar transferase family protein transcript=eq;prot=eq; - 1 No
AT1G75120 ath REDUCED RESIDUAL ARABINOSE 1 (RRA1); LOCATED IN: endomembrane system, endoplasmic reticulum; EXPRESSED IN: meristem; CONTAINS InterPro DOMAIN/s: Reticulon (InterPro:IPR003388), Nucleotide-diphospho-sugar transferase, predicted (InterPro:IPR005069); BEST Arabidopsis thaliana protein match is: Nucleotide-diphospho-sugar transferase family protein (TAIR:AT1G75110.1); Has 293 Blast hits to 288 proteins in 22 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 278; Viruses - 0; Other Eukaryotes - 15 (source: NCBI BLink).;Nucleotide-diphospho-sugar transferase family protein transcript=eq;prot=eq; - 1 No
AT2G30170 ath Protein phosphatase 2C family protein; FUNCTIONS IN: phosphoprotein phosphatase activity, catalytic activity; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein phosphatase 2C-related (InterPro:IPR001932), Sporulation stage II, protein E C-terminal (InterPro:IPR010822); BEST Arabidopsis thaliana protein match is: Protein phosphatase 2C family protein (TAIR:AT4G16580.1); Has 36 Blast hits to 36 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 36; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).;Protein phosphatase 2C family protein transcript=eq;prot=eq; - 2 No
AT4G16580 ath Protein phosphatase 2C family protein; FUNCTIONS IN: phosphoprotein phosphatase activity, catalytic activity; CONTAINS InterPro DOMAIN/s: Protein phosphatase 2C-related (InterPro:IPR001932), Sporulation stage II, protein E C-terminal (InterPro:IPR010822); BEST Arabidopsis thaliana protein match is: Protein phosphatase 2C family protein (TAIR:AT5G66720.1); Has 838 Blast hits to 828 proteins in 210 species: Archae - 0; Bacteria - 2; Metazoa - 184; Fungi - 235; Plants - 232; Viruses - 0; Other Eukaryotes - 185 (source: NCBI BLink).;Protein phosphatase 2C family protein transcript=eq;prot=eq; - 4 No
AT4G33500 ath Protein phosphatase 2C family protein; FUNCTIONS IN: protein serine/threonine phosphatase activity, phosphoprotein phosphatase activity, catalytic activity; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein phosphatase 2C-related (InterPro:IPR001932), Sporulation stage II, protein E C-terminal (InterPro:IPR010822); BEST Arabidopsis thaliana protein match is: Protein phosphatase 2C family protein (TAIR:AT4G16580.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).;Protein phosphatase 2C family protein transcript=eq;prot=eq; - 4 No
AT5G66720 ath Protein phosphatase 2C family protein; FUNCTIONS IN: phosphoprotein phosphatase activity, catalytic activity; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast stroma, chloroplast; EXPRESSED IN: guard cell; CONTAINS InterPro DOMAIN/s: Protein phosphatase 2C-related (InterPro:IPR001932), Sporulation stage II, protein E C-terminal (InterPro:IPR010822); BEST Arabidopsis thaliana protein match is: Protein phosphatase 2C family protein (TAIR:AT4G16580.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).;Protein phosphatase 2C family protein transcript=eq;prot=eq; - 5 No
BD1G04520 bdi phosphoprotein phosphatase activity (Blast2GO) pid=Bradi1g04520.1;tid=Bradi1g04520.1;GeneName=Bradi1g04520;transcript=eq;prot=eq - Bd1 No
BD1G15990 bdi Similar to glycosyltransferase. CAZy family GT77 pid=Bradi1g15990.1;tid=Bradi1g15990.1;GeneName=Bradi1g15990;Name=BdRRA2;transcript=eq;prot=eq + Bd1 No
BD1G23050 bdi Similar to glycosyltransferase. CAZy family GT77 pid=Bradi1g23050.1;tid=Bradi1g23050.1;GeneName=Bradi1g23050;Name=BdRRA1;transcript=eq;prot=eq + Bd1 No
BD1G36330 bdi phosphoprotein phosphatase activity (Blast2GO) pid=Bradi1g36330.1;tid=Bradi1g36330.1;GeneName=Bradi1g36330;transcript=eq;prot=eq + Bd1 No
BD1G36690 bdi phosphoprotein phosphatase activity (Blast2GO) pid=Bradi1g36690.1;tid=Bradi1g36690.1;GeneName=Bradi1g36690;transcript=eq;prot=eq - Bd1 No
BD1G37500 bdi phosphoprotein phosphatase activity (Blast2GO) pid=Bradi1g37500.1;tid=Bradi1g37500.1;GeneName=Bradi1g37500;transcript=eq;prot=eq + Bd1 No
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