Gene family  

Sub-families
ORTHO000400 (62 genes in 25 species)
ORTHO000521 (55 genes in 23 species)
ORTHO001848 (35 genes in 25 species)
View all sub-families (7)
 
Keywords


Overview of gene family content




aly
Arabidopsis lyrata (12 genes)
ath
Arabidopsis thaliana (10 genes)
bdi
Brachypodium distachyon (9 genes)
cpa
Carica papaya (7 genes)
cre
Chlamydomonas reinhardtii (4 genes)
fve
Fragaria vesca (7 genes)
gma
Glycine max (14 genes)
lja
Lotus japonicus (10 genes)
mdo
Malus domestica (21 genes)
mes
Manihot esculenta (9 genes)
mrcc299
Micromonas sp. RCC299 (3 genes)
mtr
Medicago truncatula (7 genes)
olu
Ostreococcus lucimarinus (4 genes)
osa
Oryza sativa ssp. japonica (8 genes)
osaindica
Oryza sativa ssp. indica (13 genes)
ota
Ostreococcus tauri (3 genes)
ppa
Physcomitrella patens (9 genes)
ptr
Populus trichocarpa (18 genes)
rco
Ricinus communis (7 genes)
sbi
Sorghum bicolor (9 genes)
smo
Selaginella moellendorffii (5 genes)
tca
Theobroma cacao (8 genes)
vca
Volvox carteri (3 genes)
vvi
Vitis vinifera (7 genes)
zma
Zea mays (14 genes)



The gene family HOM000425 has 221 genes in 25 species (8 outlier genes).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
This page uses the Flash plugin.




Index of genes with 1 constraints:

Page 1 of 12, showing 20 records out of 221 total, starting on record 1, ending on 20

gene_id species description comment strand chr outlier
AL1G20020 aly name=fgenesh1_pg.C_scaffold_1001725;pid=335160;prot=eq;tid=335160 + scaffold_1 No
AL1G27400 aly name=scaffold_102917.1;pid=890123;prot=eq;tid=921636 + scaffold_1 No
AL1G50060 aly name=fgenesh2_kg.1__4560__AT1G55490.2;pid=474606;prot=eq;tid=474606 - scaffold_1 No
AL3G14560 aly name=fgenesh2_kg.3__1490__AT3G13860.1;pid=478789;prot=eq;tid=478789 - scaffold_3 No
AL3G27350 aly name=scaffold_302955.1;pid=898985;prot=eq;tid=930498 - scaffold_3 No
AL4G12100 aly name=fgenesh2_kg.4__768__AT2G28000.1;pid=481708;prot=eq;tid=481708 - scaffold_4 No
AL4G18410 aly name=scaffold_401891.1;pid=902390;prot=eq;tid=933903 - scaffold_4 No
AL4G19090 aly name=Al_scaffold_0004_1853;pid=869690;prot=eq;tid=901203 - scaffold_4 No
AL6G18970 aly name=fgenesh2_kg.6__1902__AT5G18820.1;pid=488768;prot=eq;tid=488768 + scaffold_6 No
AL7G31590 aly name=fgenesh1_pg.C_scaffold_7002655;pid=355482;prot=eq;tid=355482 - scaffold_7 No
AL8G12600 aly name=scaffold_801273.1;pid=917873;prot=eq;tid=949386 + scaffold_8 No
AL8G22070 aly name=fgenesh2_kg.8__1555__AT5G56500.1;pid=495739;prot=eq;tid=495739 + scaffold_8 No
AT1G19086 ath unknown protein; LOCATED IN: endomembrane system; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). transcript=eq;prot=eq; + 1 Yes
AT1G26230 ath TCP-1/cpn60 chaperonin family protein; FUNCTIONS IN: ATP binding; INVOLVED IN: protein refolding, cellular protein metabolic process; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Chaperonin Cpn60/TCP-1 (InterPro:IPR002423), Chaperonin Cpn60 (InterPro:IPR001844); BEST Arabidopsis thaliana protein match is: chaperonin 60 beta (TAIR:AT1G55490.2); Has 34077 Blast hits to 34022 proteins in 8740 species: Archae - 776; Bacteria - 21861; Metazoa - 1711; Fungi - 1609; Plants - 849; Viruses - 2; Other Eukaryotes - 7269 (source: NCBI BLink).;TCP-1/cpn60 chaperonin family protein transcript=eq;prot=eq; - 1 No
AT1G55490 ath encodes the beta subunit of the chloroplast chaperonin 60, a homologue of bacterial GroEL. Mutants in this gene develops lesions on its leaves, expresses systemic acquired resistance (SAR) and develops accelerated cell death to heat shock stress. The protein has molecular chaperone activity for suppressing protein aggregation in vitro.;chaperonin 60 beta transcript=eq;prot=eq; - 1 No
AT2G28000 ath Encodes chaperonin-60 alpha, a molecular chaperone involved in Rubisco folding. Mutants display aberrant chloroplast and embryo development.;chaperonin-60alpha transcript=eq;prot=eq; + 2 No
AT2G33210 ath heat shock protein 60-2 (HSP60-2); FUNCTIONS IN: copper ion binding, ATP binding; INVOLVED IN: inflammatory response, response to salt stress; LOCATED IN: mitochondrion, plasma membrane, chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Chaperonin Cpn60/TCP-1 (InterPro:IPR002423), Chaperonin Cpn60, conserved site (InterPro:IPR018370), Chaperonin Cpn60 (InterPro:IPR001844); BEST Arabidopsis thaliana protein match is: heat shock protein 60 (TAIR:AT3G23990.1); Has 33915 Blast hits to 33873 proteins in 8692 species: Archae - 707; Bacteria - 21782; Metazoa - 1680; Fungi - 1548; Plants - 807; Viruses - 2; Other Eukaryotes - 7389 (source: NCBI BLink).;heat shock protein 60-2 transcript=eq;prot=eq; - 2 No
AT3G13470 ath TCP-1/cpn60 chaperonin family protein; FUNCTIONS IN: ATP binding; INVOLVED IN: protein folding, protein refolding, cellular protein metabolic process; LOCATED IN: in 7 components; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Chaperonin Cpn60/TCP-1 (InterPro:IPR002423), Chaperonin Cpn60, conserved site (InterPro:IPR018370), Chaperonin Cpn60 (InterPro:IPR001844); BEST Arabidopsis thaliana protein match is: chaperonin 60 beta (TAIR:AT1G55490.2); Has 34219 Blast hits to 34175 proteins in 8725 species: Archae - 803; Bacteria - 21843; Metazoa - 1743; Fungi - 1612; Plants - 836; Viruses - 2; Other Eukaryotes - 7380 (source: NCBI BLink).;TCP-1/cpn60 chaperonin family protein transcript=eq;prot=eq; + 3 No
AT3G13860 ath heat shock protein 60-3A (HSP60-3A); FUNCTIONS IN: ATP binding; INVOLVED IN: response to cadmium ion; LOCATED IN: mitochondrion, plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Chaperonin Cpn60/TCP-1 (InterPro:IPR002423), Chaperonin Cpn60, conserved site (InterPro:IPR018370), Chaperonin Cpn60 (InterPro:IPR001844); BEST Arabidopsis thaliana protein match is: heat shock protein 60 (TAIR:AT3G23990.1); Has 33806 Blast hits to 33780 proteins in 8724 species: Archae - 691; Bacteria - 21872; Metazoa - 1598; Fungi - 1587; Plants - 751; Viruses - 2; Other Eukaryotes - 7305 (source: NCBI BLink).;heat shock protein 60-3A transcript=eq;prot=eq; - 3 No
AT3G23990 ath mitochondrial chaperonin HSP. assist in rapid assembly of the oligomeric protein structures in the mitochondria.;heat shock protein 60 transcript=eq;prot=eq; + 3 No
<< previous
1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 next >>

Download genes

Include following columns
gene_id
species
description
comment
strand
chr
outlier