Gene family  

Sub-families
ORTHO006547 (24 genes in 17 species)
ORTHO008765 (21 genes in 18 species)
ORTHO008846 (21 genes in 16 species)
View all sub-families (24)
 
Keywords


Overview of gene family content




aly
Arabidopsis lyrata (11 genes)
ath
Arabidopsis thaliana (11 genes)
bdi
Brachypodium distachyon (8 genes)
cpa
Carica papaya (8 genes)
cre
Chlamydomonas reinhardtii (1 gene)
fve
Fragaria vesca (7 genes)
gma
Glycine max (22 genes)
lja
Lotus japonicus (11 genes)
mdo
Malus domestica (29 genes)
mes
Manihot esculenta (13 genes)
mrcc299
Micromonas sp. RCC299 (3 genes)
mtr
Medicago truncatula (3 genes)
olu
Ostreococcus lucimarinus (3 genes)
osa
Oryza sativa ssp. japonica (9 genes)
osaindica
Oryza sativa ssp. indica (8 genes)
ota
Ostreococcus tauri (3 genes)
ppa
Physcomitrella patens (1 gene)
ptr
Populus trichocarpa (17 genes)
rco
Ricinus communis (9 genes)
sbi
Sorghum bicolor (9 genes)
smo
Selaginella moellendorffii (1 gene)
tca
Theobroma cacao (9 genes)
vca
Volvox carteri (1 gene)
vvi
Vitis vinifera (10 genes)
zma
Zea mays (14 genes)



The gene family HOM000424 has 221 genes in 25 species (18 outlier genes).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
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Index of genes with 1 constraints:

Page 1 of 12, showing 20 records out of 221 total, starting on record 1, ending on 20

gene_id species description comment strand chr outlier
AL1G14320 aly name=fgenesh2_kg.1__1476__AT1G13610.1;pid=471522;prot=eq;tid=471522 - scaffold_1 No
AL1G33410 aly name=fgenesh2_kg.1__3355__AT1G32190.1;pid=473401;prot=eq;tid=473401 - scaffold_1 No
AL2G14570 aly name=scaffold_201473.1;pid=894399;prot=eq;tid=925912 + scaffold_2 No
AL2G15830 aly name=fgenesh2_kg.2__1013__AT1G67785.1;pid=475883;prot=eq;tid=475883 - scaffold_2 Yes
AL3G00420 aly name=fgenesh2_kg.3__47__AT3G01690.1;pid=477346;prot=eq;tid=477346 - scaffold_3 No
AL4G04470 aly name=fgenesh1_pm.C_scaffold_4000299;pid=320242;prot=eq;tid=320242 - scaffold_4 No
AL5G09740 aly name=fgenesh1_pm.C_scaffold_5000580;pid=323036;prot=eq;tid=323036 + scaffold_5 No
AL6G14150 aly name=fgenesh2_kg.6__1413__AT5G14390.1;pid=488279;prot=eq;tid=488279 - scaffold_6 No
AL7G10530 aly name=fgenesh1_pm.C_scaffold_7000842;pid=328615;prot=eq;tid=328615 + scaffold_7 No
AL7G17380 aly name=fgenesh2_kg.7__1799__AT4G24760.1;pid=492366;prot=eq;tid=492366 + scaffold_7 No
AL7G40520 aly name=fgenesh2_kg.7__3589__AT5G38220.3;pid=494156;prot=eq;tid=494156 - scaffold_7 No
AT1G13610 ath alpha/beta-Hydrolases superfamily protein; EXPRESSED IN: cotyledon, hypocotyl, root; CONTAINS InterPro DOMAIN/s: Alpha/beta hydrolase fold-1 (InterPro:IPR000073); BEST Arabidopsis thaliana protein match is: alpha/beta-Hydrolases superfamily protein (TAIR:AT3G30380.2); Has 4490 Blast hits to 4478 proteins in 963 species: Archae - 8; Bacteria - 1669; Metazoa - 672; Fungi - 266; Plants - 333; Viruses - 11; Other Eukaryotes - 1531 (source: NCBI BLink).;alpha/beta-Hydrolases superfamily protein transcript=eq;prot=eq; - 1 No
AT1G32190 ath alpha/beta-Hydrolases superfamily protein; FUNCTIONS IN: hydrolase activity; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: plasma membrane; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Phospholipase/carboxylesterase (InterPro:IPR003140); BEST Arabidopsis thaliana protein match is: alpha/beta-Hydrolases superfamily protein (TAIR:AT4G31020.1); Has 9321 Blast hits to 5856 proteins in 779 species: Archae - 6; Bacteria - 1089; Metazoa - 5494; Fungi - 254; Plants - 546; Viruses - 17; Other Eukaryotes - 1915 (source: NCBI BLink).;alpha/beta-Hydrolases superfamily protein transcript=eq;prot=eq; - 1 No
AT1G66900 ath alpha/beta-Hydrolases superfamily protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF818 (InterPro:IPR008536); BEST Arabidopsis thaliana protein match is: alpha/beta-Hydrolases superfamily protein (TAIR:AT5G38220.3); Has 3645 Blast hits to 3636 proteins in 755 species: Archae - 4; Bacteria - 1186; Metazoa - 604; Fungi - 183; Plants - 290; Viruses - 6; Other Eukaryotes - 1372 (source: NCBI BLink).;alpha/beta-Hydrolases superfamily protein transcript=eq;prot=eq; + 1 No
AT1G67785 ath unknown protein; Has 30 Blast hits to 30 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 30; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). transcript=eq;prot=eq; - 1 Yes
AT2G24320 ath alpha/beta-Hydrolases superfamily protein; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, petal differentiation and expansion stage; BEST Arabidopsis thaliana protein match is: alpha/beta-Hydrolases superfamily protein (TAIR:AT4G31020.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).;alpha/beta-Hydrolases superfamily protein transcript=eq;prot=eq; - 2 No
AT3G01690 ath alpha/beta-Hydrolases superfamily protein; CONTAINS InterPro DOMAIN/s: Alpha/beta hydrolase fold-1 (InterPro:IPR000073); BEST Arabidopsis thaliana protein match is: alpha/beta-Hydrolases superfamily protein (TAIR:AT5G14390.1); Has 3903 Blast hits to 3890 proteins in 823 species: Archae - 8; Bacteria - 1296; Metazoa - 705; Fungi - 204; Plants - 316; Viruses - 6; Other Eukaryotes - 1368 (source: NCBI BLink).;alpha/beta-Hydrolases superfamily protein transcript=eq;prot=eq; + 3 No
AT3G30380 ath alpha/beta-Hydrolases superfamily protein; CONTAINS InterPro DOMAIN/s: Alpha/beta hydrolase fold-1 (InterPro:IPR000073); BEST Arabidopsis thaliana protein match is: alpha/beta-Hydrolases superfamily protein (TAIR:AT3G01690.1); Has 4135 Blast hits to 4125 proteins in 834 species: Archae - 12; Bacteria - 1370; Metazoa - 720; Fungi - 213; Plants - 304; Viruses - 6; Other Eukaryotes - 1510 (source: NCBI BLink).;alpha/beta-Hydrolases superfamily protein transcript=eq;prot=eq; + 3 No
AT4G24760 ath alpha/beta-Hydrolases superfamily protein; FUNCTIONS IN: serine-type peptidase activity; INVOLVED IN: proteolysis; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase S9, prolyl oligopeptidase, catalytic domain (InterPro:IPR001375); BEST Arabidopsis thaliana protein match is: alpha/beta-Hydrolases superfamily protein (TAIR:AT5G14390.1); Has 3811 Blast hits to 3801 proteins in 821 species: Archae - 8; Bacteria - 1310; Metazoa - 620; Fungi - 194; Plants - 289; Viruses - 6; Other Eukaryotes - 1384 (source: NCBI BLink).;alpha/beta-Hydrolases superfamily protein transcript=eq;prot=eq; - 4 No
AT4G31020 ath alpha/beta-Hydrolases superfamily protein; FUNCTIONS IN: hydrolase activity; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Phospholipase/carboxylesterase (InterPro:IPR003140); BEST Arabidopsis thaliana protein match is: alpha/beta-Hydrolases superfamily protein (TAIR:AT2G24320.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).;alpha/beta-Hydrolases superfamily protein transcript=eq;prot=eq; - 4 No
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