Gene family  

Sub-families
ORTHO001426 (38 genes in 20 species)
ORTHO003771 (28 genes in 20 species)
ORTHO009632 (20 genes in 17 species)
View all sub-families (24)
 
Keywords


Overview of gene family content




aly
Arabidopsis lyrata (11 genes)
ath
Arabidopsis thaliana (11 genes)
bdi
Brachypodium distachyon (9 genes)
cpa
Carica papaya (7 genes)
fve
Fragaria vesca (10 genes)
gma
Glycine max (21 genes)
lja
Lotus japonicus (7 genes)
mdo
Malus domestica (26 genes)
mes
Manihot esculenta (11 genes)
mrcc299
Micromonas sp. RCC299 (1 gene)
mtr
Medicago truncatula (7 genes)
olu
Ostreococcus lucimarinus (1 gene)
osa
Oryza sativa ssp. japonica (12 genes)
osaindica
Oryza sativa ssp. indica (11 genes)
ota
Ostreococcus tauri (1 gene)
ppa
Physcomitrella patens (7 genes)
ptr
Populus trichocarpa (13 genes)
rco
Ricinus communis (8 genes)
sbi
Sorghum bicolor (11 genes)
smo
Selaginella moellendorffii (4 genes)
tca
Theobroma cacao (9 genes)
vvi
Vitis vinifera (7 genes)
zma
Zea mays (16 genes)



The gene family HOM000423 has 221 genes in 23 species (44 outlier genes).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
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Index of genes with 1 constraints:

Page 1 of 12, showing 20 records out of 221 total, starting on record 1, ending on 20

gene_id species description comment strand chr outlier
AL0G07730 aly name=scaffold_34700001.1;pid=920541;prot=eq;tid=952054 - scaffold_347 Yes
AL1G11990 aly name=scaffold_101275.1;pid=888481;prot=eq;tid=919994 + scaffold_1 No
AL1G45170 aly name=scaffold_104797.1;pid=892003;prot=eq;tid=923516 + scaffold_1 No
AL2G00070 aly name=scaffold_200007.1;pid=892933;prot=eq;tid=924446 - scaffold_2 No
AL2G00830 aly name=fgenesh1_pm.C_scaffold_2000048;pid=315015;prot=eq;tid=315015 - scaffold_2 Yes
AL2G00840 aly name=fgenesh2_kg.2__66__AT1G64180.1;pid=474936;prot=eq;tid=474936 - scaffold_2 No
AL3G11980 aly name=fgenesh2_kg.3__1205__AT3G11590.1;pid=478504;prot=eq;tid=478504 + scaffold_3 No
AL3G22170 aly name=fgenesh2_kg.3__2260__AT3G20350.1;pid=479559;prot=eq;tid=479559 + scaffold_3 No
AL6G21970 aly name=fgenesh2_kg.6__2216__AT5G22310.1;pid=489082;prot=eq;tid=489082 - scaffold_6 No
AL7G36000 aly name=fgenesh2_kg.7__3257__AT5G41650.1;pid=493824;prot=eq;tid=493824 - scaffold_7 Yes
AL7G36020 aly name=fgenesh2_kg.7__3258__AT5G41620.1;pid=493825;prot=eq;tid=493825 - scaffold_7 No
AT1G11690 ath unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G20350.1); Has 5959 Blast hits to 4807 proteins in 476 species: Archae - 156; Bacteria - 436; Metazoa - 2789; Fungi - 309; Plants - 336; Viruses - 9; Other Eukaryotes - 1924 (source: NCBI BLink). transcript=eq;prot=eq; + 1 No
AT1G50660 ath unknown protein; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G20350.1); Has 21445 Blast hits to 15134 proteins in 1325 species: Archae - 461; Bacteria - 2309; Metazoa - 11052; Fungi - 1737; Plants - 1035; Viruses - 42; Other Eukaryotes - 4809 (source: NCBI BLink). transcript=eq;prot=eq; + 1 No
AT1G64180 ath intracellular protein transport protein USO1-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 9 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G41620.1); Has 2997 Blast hits to 2464 proteins in 355 species: Archae - 17; Bacteria - 245; Metazoa - 1676; Fungi - 267; Plants - 224; Viruses - 17; Other Eukaryotes - 551 (source: NCBI BLink).;intracellular protein transport protein USO1-related transcript=eq;prot=eq; + 1 No
AT1G64185 ath Lactoylglutathione lyase / glyoxalase I family protein; BEST Arabidopsis thaliana protein match is: Lactoylglutathione lyase / glyoxalase I family protein (TAIR:AT5G41650.1); Has 78 Blast hits to 78 proteins in 36 species: Archae - 0; Bacteria - 18; Metazoa - 0; Fungi - 0; Plants - 44; Viruses - 0; Other Eukaryotes - 16 (source: NCBI BLink).;Lactoylglutathione lyase / glyoxalase I family protein transcript=eq;prot=eq; + 1 Yes
AT1G64690 ath Encodes BRANCHLESS TRICHOME (BLT) involved in trichome development. A large portion of the internal amino acid sequence of BLT is predicted to form a coiled-coil domain. BLT mutants form branchless trichomes with blunt tips.;branchless trichome transcript=eq;prot=eq; + 1 No
AT2G46250 ath myosin heavy chain-related; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G41620.1); Has 7147 Blast hits to 5689 proteins in 552 species: Archae - 71; Bacteria - 743; Metazoa - 3204; Fungi - 473; Plants - 374; Viruses - 9; Other Eukaryotes - 2273 (source: NCBI BLink).;myosin heavy chain-related transcript=eq;prot=eq; + 2 No
AT3G11590 ath unknown protein; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G22310.1); Has 22320 Blast hits to 15179 proteins in 1213 species: Archae - 372; Bacteria - 2307; Metazoa - 10906; Fungi - 1700; Plants - 1146; Viruses - 65; Other Eukaryotes - 5824 (source: NCBI BLink). transcript=eq;prot=eq; + 3 No
AT3G20350 ath unknown protein; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: cotyledon; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G50660.1); Has 15095 Blast hits to 11224 proteins in 1051 species: Archae - 223; Bacteria - 1586; Metazoa - 7000; Fungi - 1255; Plants - 746; Viruses - 40; Other Eukaryotes - 4245 (source: NCBI BLink). transcript=eq;prot=eq; + 3 No
AT5G22310 ath unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G11590.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). transcript=eq;prot=eq; - 5 No
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