Gene family  

Sub-families
ORTHO002495 (32 genes in 19 species)
ORTHO007067 (23 genes in 21 species)
ORTHO009289 (20 genes in 19 species)
View all sub-families (23)
 
Keywords


Overview of gene family content




aly
Arabidopsis lyrata (7 genes)
ath
Arabidopsis thaliana (8 genes)
bdi
Brachypodium distachyon (8 genes)
cpa
Carica papaya (13 genes)
cre
Chlamydomonas reinhardtii (4 genes)
fve
Fragaria vesca (11 genes)
gma
Glycine max (21 genes)
lja
Lotus japonicus (5 genes)
mdo
Malus domestica (25 genes)
mes
Manihot esculenta (12 genes)
mrcc299
Micromonas sp. RCC299 (4 genes)
mtr
Medicago truncatula (13 genes)
olu
Ostreococcus lucimarinus (2 genes)
osa
Oryza sativa ssp. japonica (10 genes)
osaindica
Oryza sativa ssp. indica (9 genes)
ota
Ostreococcus tauri (2 genes)
ppa
Physcomitrella patens (6 genes)
ptr
Populus trichocarpa (14 genes)
rco
Ricinus communis (9 genes)
sbi
Sorghum bicolor (8 genes)
smo
Selaginella moellendorffii (1 gene)
tca
Theobroma cacao (10 genes)
vca
Volvox carteri (2 genes)
vvi
Vitis vinifera (7 genes)
zma
Zea mays (11 genes)



The gene family HOM000422 has 222 genes in 25 species (25 outlier genes).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
This page uses the Flash plugin.




Index of genes with 1 constraints:

Page 1 of 12, showing 20 records out of 222 total, starting on record 1, ending on 20

gene_id species description comment strand chr outlier
AL2G17190 aly name=fgenesh2_kg.2__1149__AT1G68910.1;pid=476019;prot=eq;tid=476019 - scaffold_2 No
AL2G29280 aly name=fgenesh2_kg.2__2328__AT1G80510.1;pid=477198;prot=eq;tid=477198 - scaffold_2 No
AL3G12700 aly name=fgenesh2_kg.3__1282__AT3G12210.2;pid=478581;prot=eq;tid=478581 + scaffold_3 Yes
AL4G27290 aly name=fgenesh2_kg.4__2158__AT2G40420.1;pid=483098;prot=eq;tid=483098 + scaffold_4 No
AL5G09750 aly name=Al_scaffold_0005_933;pid=865454;prot=eq;tid=896967 - scaffold_5 No
AL5G26460 aly name=fgenesh2_kg.5__2054__AT3G56200.1;pid=486062;prot=eq;tid=486062 + scaffold_5 No
AL7G39650 aly name=fgenesh1_pg.C_scaffold_7003279;pid=356106;prot=eq;tid=356106 - scaffold_7 No
AT1G68910 ath Encodes one of the WPP domain-interacting proteins (WIT1/AT5G11390, WIT2/AT1G68910) required for RanGAP nuclear envelope association in root tip cells. Ran GTPase plays essential roles in multiple cellular processes, including nucleocytoplasmic transport, spindle formation, and postmitotic nuclear envelope reassembly. The cytoplasmic Ran GTPase activating protein RanGAP is critical to establish a functional RanGTP/RanGDP gradient across the nuclear envelope and is associated with the outer surface of the nuclear envelope in metazoan and higher plant cells. Arabidopsis thaliana RanGAP association with the root tip nuclear envelope requires a family of likely plant-specific nucleoporins combining coiled-coil and transmembrane domains (CC-TMD) and WPP domain-interacting proteins (WIPs). WIT1 and WIT2 have been identified as a second family of CC-TMD proteins, structurally similar, yet clearly distinct from the WIP family, that is required for RanGAP nuclear envelop association in root tip cells.;WPP domain-interacting protein 2 transcript=eq;prot=eq; - 1 No
AT1G80510 ath Encodes a close relative of the amino acid transporter ANT1 (AT3G11900).;Transmembrane amino acid transporter family protein transcript=eq;prot=eq; + 1 No
AT2G40420 ath Encodes a putative amino acid transporter.;Transmembrane amino acid transporter family protein transcript=eq;prot=eq; + 2 No
AT3G12210 ath DNA binding; FUNCTIONS IN: DNA binding; INVOLVED IN: DNA repair; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Helix-hairpin-helix DNA-binding motif, class 1 (InterPro:IPR003583); Has 226 Blast hits to 226 proteins in 103 species: Archae - 3; Bacteria - 2; Metazoa - 90; Fungi - 78; Plants - 41; Viruses - 0; Other Eukaryotes - 12 (source: NCBI BLink).;DNA binding transcript=eq;prot=eq; + 3 Yes
AT3G30390 ath Encodes a putative amino acid transporter.;Transmembrane amino acid transporter family protein transcript=eq;prot=eq; - 3 No
AT3G56200 ath Encodes a putative amino acid transporter.;Transmembrane amino acid transporter family protein transcript=eq;prot=eq; + 3 No
AT5G11390 ath Encodes one of the WPP domain-interacting proteins (WIT1/AT5G11390, WIT2/AT1G68910) required for RanGAP nuclear envelope association in root tip cells. Ran GTPase plays essential roles in multiple cellular processes, including nucleocytoplasmic transport, spindle formation, and postmitotic nuclear envelope reassembly. The cytoplasmic Ran GTPase activating protein RanGAP is critical to establish a functional RanGTP/RanGDP gradient across the nuclear envelope and is associated with the outer surface of the nuclear envelope in metazoan and higher plant cells. Arabidopsis thaliana RanGAP association with the root tip nuclear envelope requires a family of likely plant-specific nucleoporins combining coiled-coil and transmembrane domains (CC-TMD) and WPP domain-interacting proteins (WIPs). WIT1 and WIT2 have been identified as a second family of CC-TMD proteins, structurally similar, yet clearly distinct from the WIP family, that is required for RanGAP nuclear envelop association in root tip cells.;WPP domain-interacting protein 1 transcript=eq;prot=eq; + 5 No
AT5G38820 ath Encodes a putative amino acid transporter.;Transmembrane amino acid transporter family protein transcript=eq;prot=eq; + 5 No
BD1G09980 bdi pid=Bradi1g09980.1;tid=Bradi1g09980.1;GeneName=Bradi1g09980;transcript=eq;prot=eq + Bd1 Yes
BD1G30590 bdi hydrogen:amino acid symporter activity, L-histidine transmembrane transporter activity, glycine transmembrane transporter activity, L-glutamine transmembrane transporter activity, L-alanine transmembrane transporter activity, L-asparagine transmembrane transporter activity (Blast2GO) pid=Bradi1g30590.1;tid=Bradi1g30590.1;GeneName=Bradi1g30590;transcript=eq;prot=eq - Bd1 No
BD1G35530 bdi hydrogen:amino acid symporter activity, L-glutamine transmembrane transporter activity (Blast2GO) pid=Bradi1g35530.1;tid=Bradi1g35530.1;GeneName=Bradi1g35530;transcript=eq;prot=eq - Bd1 No
BD1G43630 bdi L-glutamate transmembrane transporter activity, hydrogen:amino acid symporter activity, L-histidine transmembrane transporter activity, L-glutamine transmembrane transporter activity, L-aspartate transmembrane transporter activity, L-asparagine transmembrane transporter activity (Blast2GO) pid=Bradi1g43630.2;tid=Bradi1g43630.2;GeneName=Bradi1g43630;transcript=eq;prot=eq - Bd1 No
BD2G08060 bdi motor activity (Blast2GO) pid=Bradi2g08060.1;tid=Bradi2g08060.1;GeneName=Bradi2g08060;transcript=eq;prot=eq - Bd2 No
<< previous
1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 next >>

Download genes

Include following columns
gene_id
species
description
comment
strand
chr
outlier