Gene family  

Sub-families
ORTHO007379 (23 genes in 18 species)
ORTHO010138 (19 genes in 11 species)
ORTHO010471 (19 genes in 13 species)
View all sub-families (20)
 
Keywords


Overview of gene family content




aly
Arabidopsis lyrata (11 genes)
ath
Arabidopsis thaliana (12 genes)
bdi
Brachypodium distachyon (5 genes)
cpa
Carica papaya (10 genes)
fve
Fragaria vesca (9 genes)
gma
Glycine max (22 genes)
lja
Lotus japonicus (10 genes)
mdo
Malus domestica (23 genes)
mes
Manihot esculenta (14 genes)
mtr
Medicago truncatula (20 genes)
osa
Oryza sativa ssp. japonica (7 genes)
osaindica
Oryza sativa ssp. indica (7 genes)
ppa
Physcomitrella patens (2 genes)
ptr
Populus trichocarpa (16 genes)
rco
Ricinus communis (8 genes)
sbi
Sorghum bicolor (11 genes)
smo
Selaginella moellendorffii (6 genes)
tca
Theobroma cacao (9 genes)
vvi
Vitis vinifera (7 genes)
zma
Zea mays (14 genes)



The gene family HOM000420 has 223 genes in 20 species (14 outlier genes).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
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Index of genes with 1 constraints:

Page 1 of 12, showing 20 records out of 223 total, starting on record 1, ending on 20

gene_id species description comment strand chr outlier
AL2G19220 aly name=scaffold_201955.1;pid=894881;prot=eq;tid=926394 + scaffold_2 No
AL3G19730 aly name=fgenesh1_pg.C_scaffold_3001722;pid=341959;prot=eq;tid=341959 + scaffold_3 No
AL5G00140 aly name=fgenesh1_pg.C_scaffold_5000010;pid=346618;prot=eq;tid=346618 + scaffold_5 No
AL5G05150 aly name=fgenesh2_kg.5__404__AT3G26510.3;pid=484412;prot=eq;tid=484412 - scaffold_5 No
AL5G17100 aly name=scaffold_501771.1;pid=906067;prot=eq;tid=937580 + scaffold_5 No
AL6G09300 aly name=fgenesh2_kg.6__912__AT5G09620.1;pid=487778;prot=eq;tid=487778 - scaffold_6 No
AL6G16090 aly name=fgenesh2_kg.6__1606__AT5G16220.1;pid=488472;prot=eq;tid=488472 - scaffold_6 No
AL6G37110 aly name=fgenesh2_kg.6__3299__AT4G05150.1;pid=490165;prot=eq;tid=490165 + scaffold_6 No
AL8G13790 aly name=fgenesh1_pm.C_scaffold_8000737;pid=331394;prot=eq;tid=331394 - scaffold_8 No
AL8G29710 aly name=Al_scaffold_0008_2845;pid=886581;prot=eq;tid=918094 + scaffold_8 No
AL8G31140 aly name=fgenesh2_kg.8__2467__AT5G64430.1;pid=496651;prot=eq;tid=496651 - scaffold_8 No
AT1G25300 ath Octicosapeptide/Phox/Bem1p family protein; CONTAINS InterPro DOMAIN/s: Octicosapeptide/Phox/Bem1p (InterPro:IPR000270); BEST Arabidopsis thaliana protein match is: Octicosapeptide/Phox/Bem1p family protein (TAIR:AT2G01190.1); Has 352 Blast hits to 352 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 352; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).;Octicosapeptide/Phox/Bem1p family protein transcript=eq;prot=eq; + 1 No
AT1G70640 ath octicosapeptide/Phox/Bem1p (PB1) domain-containing protein; CONTAINS InterPro DOMAIN/s: Octicosapeptide/Phox/Bem1p (InterPro:IPR000270); BEST Arabidopsis thaliana protein match is: Octicosapeptide/Phox/Bem1p family protein (TAIR:AT3G26510.4); Has 386 Blast hits to 386 proteins in 18 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 2; Plants - 384; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).;octicosapeptide/Phox/Bem1p (PB1) domain-containing protein transcript=eq;prot=eq; + 1 No
AT2G01190 ath Octicosapeptide/Phox/Bem1p family protein; LOCATED IN: cytosol, nucleus; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Octicosapeptide/Phox/Bem1p (InterPro:IPR000270); BEST Arabidopsis thaliana protein match is: Octicosapeptide/Phox/Bem1p family protein (TAIR:AT3G18230.1); Has 5347 Blast hits to 4615 proteins in 344 species: Archae - 4; Bacteria - 100; Metazoa - 2308; Fungi - 1293; Plants - 931; Viruses - 29; Other Eukaryotes - 682 (source: NCBI BLink).;Octicosapeptide/Phox/Bem1p family protein transcript=eq;prot=eq; + 2 No
AT3G18230 ath Octicosapeptide/Phox/Bem1p family protein; LOCATED IN: cytosol, nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Octicosapeptide/Phox/Bem1p (InterPro:IPR000270); BEST Arabidopsis thaliana protein match is: Octicosapeptide/Phox/Bem1p family protein (TAIR:AT2G01190.1); Has 3345 Blast hits to 2875 proteins in 307 species: Archae - 2; Bacteria - 131; Metazoa - 1365; Fungi - 599; Plants - 632; Viruses - 8; Other Eukaryotes - 608 (source: NCBI BLink).;Octicosapeptide/Phox/Bem1p family protein transcript=eq;prot=eq; + 3 No
AT3G26510 ath Octicosapeptide/Phox/Bem1p family protein; CONTAINS InterPro DOMAIN/s: Octicosapeptide/Phox/Bem1p (InterPro:IPR000270); BEST Arabidopsis thaliana protein match is: octicosapeptide/Phox/Bem1p (PB1) domain-containing protein (TAIR:AT1G70640.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).;Octicosapeptide/Phox/Bem1p family protein transcript=eq;prot=eq; - 3 No
AT3G48240 ath Octicosapeptide/Phox/Bem1p family protein; CONTAINS InterPro DOMAIN/s: Octicosapeptide/Phox/Bem1p (InterPro:IPR000270); BEST Arabidopsis thaliana protein match is: Octicosapeptide/Phox/Bem1p family protein (TAIR:AT5G63130.1); Has 361 Blast hits to 361 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 361; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).;Octicosapeptide/Phox/Bem1p family protein transcript=eq;prot=eq; + 3 No
AT4G05150 ath Octicosapeptide/Phox/Bem1p family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Octicosapeptide/Phox/Bem1p (InterPro:IPR000270); BEST Arabidopsis thaliana protein match is: Octicosapeptide/Phox/Bem1p family protein (TAIR:AT2G01190.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).;Octicosapeptide/Phox/Bem1p family protein transcript=eq;prot=eq; + 4 No
AT5G09620 ath Octicosapeptide/Phox/Bem1p family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Octicosapeptide/Phox/Bem1p (InterPro:IPR000270); BEST Arabidopsis thaliana protein match is: Octicosapeptide/Phox/Bem1p family protein (TAIR:AT5G64430.1); Has 18668 Blast hits to 11149 proteins in 562 species: Archae - 0; Bacteria - 597; Metazoa - 7421; Fungi - 2059; Plants - 1927; Viruses - 138; Other Eukaryotes - 6526 (source: NCBI BLink).;Octicosapeptide/Phox/Bem1p family protein transcript=eq;prot=eq; - 5 No
AT5G16220 ath Octicosapeptide/Phox/Bem1p family protein; CONTAINS InterPro DOMAIN/s: Octicosapeptide/Phox/Bem1p (InterPro:IPR000270); BEST Arabidopsis thaliana protein match is: Octicosapeptide/Phox/Bem1p family protein (TAIR:AT2G01190.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).;Octicosapeptide/Phox/Bem1p family protein transcript=eq;prot=eq; - 5 No
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