Gene family  

Sub-families
ORTHO001201 (41 genes in 23 species)
ORTHO001804 (35 genes in 24 species)
ORTHO002352 (32 genes in 19 species)
View all sub-families (12)
 
Keywords


Overview of gene family content




aly
Arabidopsis lyrata (10 genes)
ath
Arabidopsis thaliana (9 genes)
bdi
Brachypodium distachyon (8 genes)
cpa
Carica papaya (8 genes)
cre
Chlamydomonas reinhardtii (3 genes)
fve
Fragaria vesca (11 genes)
gma
Glycine max (17 genes)
lja
Lotus japonicus (10 genes)
mdo
Malus domestica (22 genes)
mes
Manihot esculenta (10 genes)
mrcc299
Micromonas sp. RCC299 (4 genes)
mtr
Medicago truncatula (8 genes)
olu
Ostreococcus lucimarinus (3 genes)
osa
Oryza sativa ssp. japonica (11 genes)
osaindica
Oryza sativa ssp. indica (12 genes)
ota
Ostreococcus tauri (2 genes)
ppa
Physcomitrella patens (12 genes)
ptr
Populus trichocarpa (14 genes)
rco
Ricinus communis (6 genes)
sbi
Sorghum bicolor (7 genes)
smo
Selaginella moellendorffii (3 genes)
tca
Theobroma cacao (7 genes)
vca
Volvox carteri (3 genes)
vvi
Vitis vinifera (12 genes)
zma
Zea mays (16 genes)



The gene family HOM000409 has 228 genes in 25 species (15 outlier genes).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
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Index of genes with 1 constraints:

Page 1 of 12, showing 20 records out of 228 total, starting on record 1, ending on 20

gene_id species description comment strand chr outlier
AL1G08090 aly name=scaffold_100870.1;pid=888076;prot=eq;tid=919589 - scaffold_1 No
AL1G08850 aly name=fgenesh2_kg.1__964__AT1G09210.1;pid=471010;prot=eq;tid=471010 - scaffold_1 No
AL1G08860 aly name=scaffold_100955.1;pid=888161;prot=eq;tid=919674 - scaffold_1 No
AL1G52600 aly name=Al_scaffold_0001_5178;pid=883411;prot=eq;tid=914924 + scaffold_1 No
AL2G09790 aly name=scaffold_200993.1;pid=893919;prot=eq;tid=925432 - scaffold_2 No
AL4G32390 aly name=fgenesh2_kg.4__2654__AT2G44620.1;pid=483594;prot=eq;tid=483594 + scaffold_4 No
AL7G33330 aly name=scaffold_703504.1;pid=915762;prot=eq;tid=947275 - scaffold_7 No
AL8G00260 aly name=fgenesh1_pm.C_scaffold_8000016;pid=330673;prot=eq;tid=330673 - scaffold_8 No
AL8G28060 aly name=fgenesh1_pg.C_scaffold_8002171;pid=358384;prot=eq;tid=358384 - scaffold_8 No
AL8G28070 aly name=fgenesh2_kg.8__2163__AT5G61790.1;pid=496347;prot=eq;tid=496347 - scaffold_8 No
AT1G08450 ath Encodes one of three Arabidopsis calreticulins. In CRT-deficient mouse fibroblasts, this protein restores ER Ca2+ levels. Non-receptor component required for EFR-mediated immunity. Mutants show de-repressed anthocyanin accumulation in the presence of elf18, and EFR accumulation and signalling.;calreticulin 3 transcript=eq;prot=eq; - 1 No
AT1G09210 ath Encodes one of three Arabidopsis calreticulins.;calreticulin 1b transcript=eq;prot=eq; - 1 No
AT1G56340 ath Encodes one of three Arabidopsis calreticulins. In CRT-deficient mouse fibroblasts, this protein restores ER Ca2+ levels.;calreticulin 1a transcript=eq;prot=eq; - 1 No
AT1G65290 ath Encodes a member of the mitochondrial acyl carrier protein (ACP) family. As part of the mitochondrial matrix, it is likely to be involved in fatty acid or lipoic acid biogenesis.;mitochondrial acyl carrier protein 2 transcript=eq;prot=eq; - 1 No
AT2G44620 ath Encodes a member of the mitochondrial acyl carrier protein (ACP) family. As part of the mitochondrial matrix, it is likely to be involved in fatty acid or lipoic acid biogenesis. Its acylated form is predominantly present in the mitochondrial membrane while the non-acylated form is soluble.;mitochondrial acyl carrier protein 1 transcript=eq;prot=eq; + 2 No
AT5G07340 ath Calreticulin family protein; FUNCTIONS IN: unfolded protein binding, calcium ion binding; INVOLVED IN: protein folding; LOCATED IN: endoplasmic reticulum; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Calreticulin/calnexin, P (InterPro:IPR009033), Calreticulin/calnexin (InterPro:IPR001580), Calreticulin/calnexin, conserved site (InterPro:IPR018124), Concanavalin A-like lectin/glucanase (InterPro:IPR008985), Concanavalin A-like lectin/glucanase, subgroup (InterPro:IPR013320); BEST Arabidopsis thaliana protein match is: calnexin 1 (TAIR:AT5G61790.1).;Calreticulin family protein transcript=eq;prot=eq; + 5 No
AT5G36280 ath BEST Arabidopsis thaliana protein match is: mitochondrial acyl carrier protein 2 (TAIR:AT1G65290.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). transcript=eq;prot=eq; - 5 Yes
AT5G47630 ath Encodes a member of the mitochondrial acyl carrier protein (ACP) family. Its role is currently obscure as it is weakly expressed and has not yet been identified by mitochondrial proteome analysis.;mitochondrial acyl carrier protein 3 transcript=eq;prot=eq; + 5 No
AT5G61790 ath calnexin 1 (CNX1); FUNCTIONS IN: unfolded protein binding, calcium ion binding; INVOLVED IN: protein folding; LOCATED IN: in 8 components; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Calreticulin/calnexin, P (InterPro:IPR009033), Calreticulin/calnexin (InterPro:IPR001580), Calreticulin/calnexin, conserved site (InterPro:IPR018124), Concanavalin A-like lectin/glucanase (InterPro:IPR008985), Concanavalin A-like lectin/glucanase, subgroup (InterPro:IPR013320); BEST Arabidopsis thaliana protein match is: Calreticulin family protein (TAIR:AT5G07340.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).;calnexin 1 transcript=eq;prot=eq; - 5 No
BD1G02940 bdi androgen receptor binding (Blast2GO) pid=Bradi1g02940.1;tid=Bradi1g02940.1;GeneName=Bradi1g02940;transcript=eq;prot=eq + Bd1 No
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