Gene family  

Sub-families
ORTHO002159 (33 genes in 22 species)
ORTHO003702 (28 genes in 23 species)
ORTHO003844 (28 genes in 21 species)
View all sub-families (21)
 
Keywords


Overview of gene family content




aly
Arabidopsis lyrata (12 genes)
ath
Arabidopsis thaliana (10 genes)
bdi
Brachypodium distachyon (9 genes)
cpa
Carica papaya (7 genes)
cre
Chlamydomonas reinhardtii (4 genes)
fve
Fragaria vesca (8 genes)
gma
Glycine max (19 genes)
lja
Lotus japonicus (3 genes)
mdo
Malus domestica (24 genes)
mes
Manihot esculenta (9 genes)
mrcc299
Micromonas sp. RCC299 (5 genes)
mtr
Medicago truncatula (9 genes)
olu
Ostreococcus lucimarinus (3 genes)
osa
Oryza sativa ssp. japonica (11 genes)
osaindica
Oryza sativa ssp. indica (11 genes)
ota
Ostreococcus tauri (2 genes)
ppa
Physcomitrella patens (10 genes)
ptr
Populus trichocarpa (15 genes)
rco
Ricinus communis (10 genes)
sbi
Sorghum bicolor (8 genes)
smo
Selaginella moellendorffii (8 genes)
tca
Theobroma cacao (8 genes)
vca
Volvox carteri (5 genes)
vvi
Vitis vinifera (8 genes)
zma
Zea mays (14 genes)



The gene family HOM000402 has 232 genes in 25 species (16 outlier genes).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
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Index of genes with 1 constraints:

Page 1 of 12, showing 20 records out of 232 total, starting on record 1, ending on 20

gene_id species description comment strand chr outlier
AL1G04310 aly name=scaffold_100456.1;pid=887662;prot=eq;tid=919175 - scaffold_1 No
AL2G10570 aly name=scaffold_201085.1;pid=894011;prot=eq;tid=925524 + scaffold_2 Yes
AL3G07230 aly name=fgenesh2_kg.3__714__AT3G06930.1;pid=478013;prot=eq;tid=478013 - scaffold_3 No
AL3G12750 aly name=fgenesh1_pm.C_scaffold_3001021;pid=318005;prot=eq;tid=318005 + scaffold_3 No
AL3G21480 aly name=fgenesh1_pg.C_scaffold_3001883;pid=342120;prot=eq;tid=342120 + scaffold_3 Yes
AL3G21830 aly name=fgenesh2_kg.3__2222__AT3G20020.1;pid=479521;prot=eq;tid=479521 - scaffold_3 No
AL3G36510 aly name=fgenesh1_pg.C_scaffold_3002996;pid=343233;prot=eq;tid=343233 + scaffold_3 No
AL4G06820 aly name=fgenesh1_pg.C_scaffold_4000503;pid=344161;prot=eq;tid=344161 + scaffold_4 No
AL6G20330 aly name=fgenesh2_kg.6__2034__AT5G20030.1;pid=488900;prot=eq;tid=488900 - scaffold_6 No
AL7G09030 aly name=fgenesh2_kg.7__914__AT4G32440.2;pid=491481;prot=eq;tid=491481 - scaffold_7 No
AL7G12200 aly name=fgenesh2_kg.7__1240__AT4G29510.1;pid=491807;prot=eq;tid=491807 - scaffold_7 No
AL8G12380 aly name=fgenesh2_kg.8__780__AT5G49020.1;pid=494964;prot=eq;tid=494964 + scaffold_8 No
AT1G04870 ath Encodes a type I protein arginine methyltransferase based on the At1g04870.2 gene model. PRMT10 can catalyze the asymmetric dimethylation of arginine 3 on histone 4 and can also methylate myelin basic protein in vitro. Mutants lacking PRMT10 flower late due to defects in the autonomous pathway and they have elevated levels of FLC transcripts.;protein arginine methyltransferase 10 transcript=eq;prot=eq; - 1 No
AT2G19670 ath protein arginine methyltransferase 1A (PRMT1A); FUNCTIONS IN: protein-arginine N-methyltransferase activity, protein methyltransferase activity; INVOLVED IN: protein amino acid methylation; LOCATED IN: cytoplasm; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal L11 methyltransferase, PrmA (InterPro:IPR010456); BEST Arabidopsis thaliana protein match is: arginine methyltransferase 11 (TAIR:AT4G29510.1); Has 2747 Blast hits to 2715 proteins in 657 species: Archae - 58; Bacteria - 647; Metazoa - 1154; Fungi - 239; Plants - 329; Viruses - 1; Other Eukaryotes - 319 (source: NCBI BLink).;protein arginine methyltransferase 1A transcript=eq;prot=eq; - 2 No
AT2G25590 ath Plant Tudor-like protein; FUNCTIONS IN: RNA binding; INVOLVED IN: biological_process unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Tudor-like, plant (InterPro:IPR014002), Agenet (InterPro:IPR008395); BEST Arabidopsis thaliana protein match is: Plant Tudor-like RNA-binding protein (TAIR:AT4G32440.3); Has 129 Blast hits to 122 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 129; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).;Plant Tudor-like protein transcript=eq;prot=eq; + 2 No
AT3G06930 ath Encodes an type I protein arginine methyltransferase. PRMT4b can catalyze the asymmetric dimethylation of arginines 2,17, and 26 on histone 3 and can also methylate myelin basic protein in vitro. Double mutants lacking PRMT4a and 4b have reduced levels of histone 3 methylated at R17. These double mutants flower late due to defects in the autonomous pathway and they have elevated levels of FLC transcripts.;protein arginine methyltransferase 4B transcript=eq;prot=eq; - 3 No
AT3G12270 ath protein arginine methyltransferase 3 (PRMT3); FUNCTIONS IN: protein methyltransferase activity, methyltransferase activity, zinc ion binding; INVOLVED IN: protein amino acid methylation; LOCATED IN: intracellular, cytoplasm; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, C2H2-like (InterPro:IPR015880), Ribosomal L11 methyltransferase, PrmA (InterPro:IPR010456), Zinc finger, C2H2-type (InterPro:IPR007087); BEST Arabidopsis thaliana protein match is: protein arginine methyltransferase 6 (TAIR:AT3G20020.1); Has 3110 Blast hits to 3077 proteins in 726 species: Archae - 48; Bacteria - 800; Metazoa - 1243; Fungi - 266; Plants - 328; Viruses - 0; Other Eukaryotes - 425 (source: NCBI BLink).;protein arginine methyltransferase 3 transcript=eq;prot=eq; + 3 No
AT3G20020 ath protein arginine methyltransferase 6 (PRMT6); FUNCTIONS IN: protein methyltransferase activity, methyltransferase activity; INVOLVED IN: protein amino acid methylation; LOCATED IN: cytoplasm; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal L11 methyltransferase, PrmA (InterPro:IPR010456); BEST Arabidopsis thaliana protein match is: protein arginine methyltransferase 1A (TAIR:AT2G19670.1); Has 5878 Blast hits to 5804 proteins in 1733 species: Archae - 156; Bacteria - 3349; Metazoa - 1214; Fungi - 260; Plants - 392; Viruses - 1; Other Eukaryotes - 506 (source: NCBI BLink).;protein arginine methyltransferase 6 transcript=eq;prot=eq; - 3 No
AT4G29510 ath Has arginine N-methyltransferase activity. Modifies AtMBD7.;arginine methyltransferase 11 transcript=eq;prot=eq; + 4 No
AT4G32440 ath Plant Tudor-like RNA-binding protein; FUNCTIONS IN: RNA binding; INVOLVED IN: biological_process unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Tudor-like, plant (InterPro:IPR014002), ENT (InterPro:IPR005491), Agenet (InterPro:IPR008395); BEST Arabidopsis thaliana protein match is: Plant Tudor-like protein (TAIR:AT2G25590.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).;Plant Tudor-like RNA-binding protein transcript=eq;prot=eq; + 4 No
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