Gene family  

Sub-families
ORTHO000375 (64 genes in 1 species)
ORTHO002823 (31 genes in 24 species)
ORTHO018620 (7 genes in 1 species)
View all sub-families (12)
 
Keywords


Overview of gene family content




aly
Arabidopsis lyrata (3 genes)
ath
Arabidopsis thaliana (3 genes)
bdi
Brachypodium distachyon (1 gene)
cpa
Carica papaya (1 gene)
cre
Chlamydomonas reinhardtii (1 gene)
fve
Fragaria vesca (1 gene)
gma
Glycine max (2 genes)
lja
Lotus japonicus (7 genes)
mdo
Malus domestica (2 genes)
mes
Manihot esculenta (1 gene)
mrcc299
Micromonas sp. RCC299 (1 gene)
mtr
Medicago truncatula (93 genes)
olu
Ostreococcus lucimarinus (1 gene)
osa
Oryza sativa ssp. japonica (2 genes)
osaindica
Oryza sativa ssp. indica (2 genes)
ota
Ostreococcus tauri (1 gene)
ppa
Physcomitrella patens (1 gene)
ptr
Populus trichocarpa (24 genes)
rco
Ricinus communis (1 gene)
sbi
Sorghum bicolor (1 gene)
tca
Theobroma cacao (78 genes)
vca
Volvox carteri (1 gene)
vvi
Vitis vinifera (2 genes)
zma
Zea mays (2 genes)



The gene family HOM000400 has 232 genes in 24 species (38 outlier genes).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
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Index of genes with 1 constraints:

Page 1 of 12, showing 20 records out of 232 total, starting on record 1, ending on 20

gene_id species description comment strand chr outlier
AL7G15450 aly name=fgenesh2_kg.7__1581__AT4G26600.1;pid=492148;prot=eq;tid=492148 - scaffold_7 No
AL7G24690 aly name=fgenesh1_pg.C_scaffold_7002107;pid=354934;prot=eq;tid=354934 + scaffold_7 No
AL8G21290 aly name=fgenesh2_kg.8__1490__AT5G55920.1;pid=495674;prot=eq;tid=495674 - scaffold_8 No
AT4G17590 ath CONTAINS InterPro DOMAIN/s: Bacterial Fmu (Sun)/eukaryotic nucleolar NOL1/Nop2p (InterPro:IPR001678); BEST Arabidopsis thaliana protein match is: S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (TAIR:AT4G26600.1); Has 459 Blast hits to 368 proteins in 186 species: Archae - 2; Bacteria - 0; Metazoa - 137; Fungi - 144; Plants - 100; Viruses - 0; Other Eukaryotes - 76 (source: NCBI BLink). transcript=eq;prot=eq; - 4 No
AT4G26600 ath S-adenosyl-L-methionine-dependent methyltransferases superfamily protein; FUNCTIONS IN: S-adenosylmethionine-dependent methyltransferase activity, methyltransferase activity, RNA binding; INVOLVED IN: rRNA processing; LOCATED IN: nucleolus; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Bacterial Fmu (Sun)/eukaryotic nucleolar NOL1/Nop2p (InterPro:IPR001678), Bacterial Fmu (Sun)/eukaryotic nucleolar NOL1/Nop2p, conserved site (InterPro:IPR018314), Nop2p (InterPro:IPR011023); BEST Arabidopsis thaliana protein match is: S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (TAIR:AT5G55920.1); Has 64231 Blast hits to 30815 proteins in 2915 species: Archae - 495; Bacteria - 29426; Metazoa - 12322; Fungi - 6487; Plants - 2396; Viruses - 589; Other Eukaryotes - 12516 (source: NCBI BLink).;S-adenosyl-L-methionine-dependent methyltransferases superfamily protein transcript=eq;prot=eq; + 4 No
AT5G55920 ath Encodes a homolog of the S. cerevisiae Nop2 that is involved in ribosome biogenesis and plays a role on organ size control by promoting cell proliferation and preventing compensation in normal leaf development.;S-adenosyl-L-methionine-dependent methyltransferases superfamily protein transcript=eq;prot=eq; - 5 No
BD3G56470 bdi rRNA (cytosine-C5-)-methyltransferase activity (Blast2GO) pid=Bradi3g56470.1;tid=Bradi3g56470.1;GeneName=Bradi3g56470;transcript=eq;prot=eq - Bd3 No
CP00012G01300 cpa name=evm.TU.supercontig_12.130;pid=evm.TU.supercontig_12.130;prot=eq;transcript=eq - supercontig_12 No
CR06G05200 cre name=gwH.3.55.1;pid=38989;prot=eq;tid=38989;transcript=eq + chromosome_6 No
FV4G09560 fve Putative ribosomal RNA methyltransferase NOP2 (similar to) transcript=eq;prot=eq;pid=gene22392 - LG4 No
GM08G44490 gma 08 pid=16273817;transcript=eq;prot=eq;name=Glyma08g44490.1 - Gm08 No
GM18G08310 gma 18 pid=16308283;transcript=eq;prot=eq;name=Glyma18g08310.1 + Gm18 No
LJ0G156320 lja partial;prot=eq;transcript=eq;scaffold=LjSGA_048999;name=LjSGA_048999.1 + LjSGA_048999 No
LJ0G321080 lja partial;prot=eq;transcript=eq;scaffold=LjSGA_112839;name=LjSGA_112839.1 + LjSGA_112839 No
LJ0G372330 lja partial;prot=eq;transcript=eq;scaffold=LjSGA_134462;name=LjSGA_134462.1 + LjSGA_134462 No
LJ0G454030 lja partial;prot=eq;transcript=eq;scaffold=LjT04A22;name=LjT04A22.10.nc - chr0 No
LJ1G005330 lja partial;prot=eq;transcript=eq;scaffold=CM1956;name=chr1.CM1956.290.nc - chr1 No
LJ1G005660 lja partial;prot=eq;transcript=eq;scaffold=CM1956;name=chr1.CM1956.500.nc + chr1 No
LJ1G005710 lja partial;prot=eq;transcript=eq;scaffold=CM1956;name=chr1.CM1956.530.nc + chr1 No
MD00G350250 mdo transcript=eq;prot=eq;pid=MDP0000849784;tid=MDP0000849784;contig=MDC015688.121 - MDC015688.121 No
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