Gene family 
- Id
- HOM000400
- Method
- BLASTP E_value=1e-05 MCL_I=2
- Sequences
- Sub-families
-
ORTHO000375 (64 genes in 1 species)
ORTHO002823 (31 genes in 24 species)
ORTHO018620 (7 genes in 1 species)
View all sub-families (12)
- Keywords
-
Overview of gene family content
- aly
- Arabidopsis lyrata (3 genes)
- ath
- Arabidopsis thaliana (3 genes)
- bdi
- Brachypodium distachyon (1 gene)
- cpa
- Carica papaya (1 gene)
- cre
- Chlamydomonas reinhardtii (1 gene)
- fve
- Fragaria vesca (1 gene)
- gma
- Glycine max (2 genes)
- lja
- Lotus japonicus (7 genes)
- mdo
- Malus domestica (2 genes)
- mes
- Manihot esculenta (1 gene)
- mrcc299
- Micromonas sp. RCC299 (1 gene)
- mtr
- Medicago truncatula (93 genes)
- olu
- Ostreococcus lucimarinus (1 gene)
- osa
- Oryza sativa ssp. japonica (2 genes)
- osaindica
- Oryza sativa ssp. indica (2 genes)
- ota
- Ostreococcus tauri (1 gene)
- ppa
- Physcomitrella patens (1 gene)
- ptr
- Populus trichocarpa (24 genes)
- rco
- Ricinus communis (1 gene)
- sbi
- Sorghum bicolor (1 gene)
- tca
- Theobroma cacao (78 genes)
- vca
- Volvox carteri (1 gene)
- vvi
- Vitis vinifera (2 genes)
- zma
- Zea mays (2 genes)
The gene family HOM000400 has 232 genes in 24 species (38 outlier genes).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
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Index of genes with 1 constraints:
- gene family : HOM000400
Page 1 of 12, showing 20 records out of 232 total, starting on record 1, ending on 20
| gene_id | species | description | comment | strand | chr | outlier |
|---|---|---|---|---|---|---|
| AL7G15450 | aly | name=fgenesh2_kg.7__1581__AT4G26600.1;pid=492148;prot=eq;tid=492148 | - | scaffold_7 | No | |
| AL7G24690 | aly | name=fgenesh1_pg.C_scaffold_7002107;pid=354934;prot=eq;tid=354934 | + | scaffold_7 | No | |
| AL8G21290 | aly | name=fgenesh2_kg.8__1490__AT5G55920.1;pid=495674;prot=eq;tid=495674 | - | scaffold_8 | No | |
| AT4G17590 | ath | CONTAINS InterPro DOMAIN/s: Bacterial Fmu (Sun)/eukaryotic nucleolar NOL1/Nop2p (InterPro:IPR001678); BEST Arabidopsis thaliana protein match is: S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (TAIR:AT4G26600.1); Has 459 Blast hits to 368 proteins in 186 species: Archae - 2; Bacteria - 0; Metazoa - 137; Fungi - 144; Plants - 100; Viruses - 0; Other Eukaryotes - 76 (source: NCBI BLink). | transcript=eq;prot=eq; | - | 4 | No |
| AT4G26600 | ath | S-adenosyl-L-methionine-dependent methyltransferases superfamily protein; FUNCTIONS IN: S-adenosylmethionine-dependent methyltransferase activity, methyltransferase activity, RNA binding; INVOLVED IN: rRNA processing; LOCATED IN: nucleolus; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Bacterial Fmu (Sun)/eukaryotic nucleolar NOL1/Nop2p (InterPro:IPR001678), Bacterial Fmu (Sun)/eukaryotic nucleolar NOL1/Nop2p, conserved site (InterPro:IPR018314), Nop2p (InterPro:IPR011023); BEST Arabidopsis thaliana protein match is: S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (TAIR:AT5G55920.1); Has 64231 Blast hits to 30815 proteins in 2915 species: Archae - 495; Bacteria - 29426; Metazoa - 12322; Fungi - 6487; Plants - 2396; Viruses - 589; Other Eukaryotes - 12516 (source: NCBI BLink).;S-adenosyl-L-methionine-dependent methyltransferases superfamily protein | transcript=eq;prot=eq; | + | 4 | No |
| AT5G55920 | ath | Encodes a homolog of the S. cerevisiae Nop2 that is involved in ribosome biogenesis and plays a role on organ size control by promoting cell proliferation and preventing compensation in normal leaf development.;S-adenosyl-L-methionine-dependent methyltransferases superfamily protein | transcript=eq;prot=eq; | - | 5 | No |
| BD3G56470 | bdi | rRNA (cytosine-C5-)-methyltransferase activity (Blast2GO) | pid=Bradi3g56470.1;tid=Bradi3g56470.1;GeneName=Bradi3g56470;transcript=eq;prot=eq | - | Bd3 | No |
| CP00012G01300 | cpa | name=evm.TU.supercontig_12.130;pid=evm.TU.supercontig_12.130;prot=eq;transcript=eq | - | supercontig_12 | No | |
| CR06G05200 | cre | name=gwH.3.55.1;pid=38989;prot=eq;tid=38989;transcript=eq | + | chromosome_6 | No | |
| FV4G09560 | fve | Putative ribosomal RNA methyltransferase NOP2 (similar to) | transcript=eq;prot=eq;pid=gene22392 | - | LG4 | No |
| GM08G44490 | gma | 08 | pid=16273817;transcript=eq;prot=eq;name=Glyma08g44490.1 | - | Gm08 | No |
| GM18G08310 | gma | 18 | pid=16308283;transcript=eq;prot=eq;name=Glyma18g08310.1 | + | Gm18 | No |
| LJ0G156320 | lja | partial;prot=eq;transcript=eq;scaffold=LjSGA_048999;name=LjSGA_048999.1 | + | LjSGA_048999 | No | |
| LJ0G321080 | lja | partial;prot=eq;transcript=eq;scaffold=LjSGA_112839;name=LjSGA_112839.1 | + | LjSGA_112839 | No | |
| LJ0G372330 | lja | partial;prot=eq;transcript=eq;scaffold=LjSGA_134462;name=LjSGA_134462.1 | + | LjSGA_134462 | No | |
| LJ0G454030 | lja | partial;prot=eq;transcript=eq;scaffold=LjT04A22;name=LjT04A22.10.nc | - | chr0 | No | |
| LJ1G005330 | lja | partial;prot=eq;transcript=eq;scaffold=CM1956;name=chr1.CM1956.290.nc | - | chr1 | No | |
| LJ1G005660 | lja | partial;prot=eq;transcript=eq;scaffold=CM1956;name=chr1.CM1956.500.nc | + | chr1 | No | |
| LJ1G005710 | lja | partial;prot=eq;transcript=eq;scaffold=CM1956;name=chr1.CM1956.530.nc | + | chr1 | No | |
| MD00G350250 | mdo | transcript=eq;prot=eq;pid=MDP0000849784;tid=MDP0000849784;contig=MDC015688.121 | - | MDC015688.121 | No |