Gene family 
- Id
- HOM000397
- Method
- BLASTP E_value=1e-05 MCL_I=2
- Sequences
- Sub-families
-
ORTHO000148 (92 genes in 25 species)
ORTHO000281 (72 genes in 25 species)
ORTHO027249 (4 genes in 3 species)
View all sub-families (10)
- Keywords
-
Overview of gene family content
- aly
- Arabidopsis lyrata (10 genes)
- ath
- Arabidopsis thaliana (8 genes)
- bdi
- Brachypodium distachyon (9 genes)
- cpa
- Carica papaya (13 genes)
- cre
- Chlamydomonas reinhardtii (3 genes)
- fve
- Fragaria vesca (10 genes)
- gma
- Glycine max (17 genes)
- lja
- Lotus japonicus (14 genes)
- mdo
- Malus domestica (20 genes)
- mes
- Manihot esculenta (11 genes)
- mrcc299
- Micromonas sp. RCC299 (3 genes)
- mtr
- Medicago truncatula (9 genes)
- olu
- Ostreococcus lucimarinus (3 genes)
- osa
- Oryza sativa ssp. japonica (10 genes)
- osaindica
- Oryza sativa ssp. indica (11 genes)
- ota
- Ostreococcus tauri (4 genes)
- ppa
- Physcomitrella patens (12 genes)
- ptr
- Populus trichocarpa (9 genes)
- rco
- Ricinus communis (10 genes)
- sbi
- Sorghum bicolor (9 genes)
- smo
- Selaginella moellendorffii (11 genes)
- tca
- Theobroma cacao (8 genes)
- vca
- Volvox carteri (3 genes)
- vvi
- Vitis vinifera (5 genes)
- zma
- Zea mays (11 genes)
The gene family HOM000397 has 233 genes in 25 species (19 outlier genes).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
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Index of genes with 1 constraints:
- gene family : HOM000397
Page 1 of 12, showing 20 records out of 233 total, starting on record 1, ending on 20
| gene_id | species | description | comment | strand | chr | outlier |
|---|---|---|---|---|---|---|
| AL1G00340 | aly | name=fgenesh2_kg.1__32__AT1G01960.1;pid=470078;prot=eq;tid=470078 | + | scaffold_1 | No | |
| AL1G14720 | aly | name=fgenesh2_kg.1__1513__AT1G13980.1;pid=471559;prot=eq;tid=471559 | + | scaffold_1 | No | |
| AL1G29360 | aly | name=scaffold_103151.1;pid=890357;prot=eq;tid=921870 | - | scaffold_1 | No | |
| AL5G10950 | aly | name=Al_scaffold_0005_1053;pid=865574;prot=eq;tid=897087 | - | scaffold_5 | No | |
| AL5G31570 | aly | name=fgenesh2_kg.5__2552__AT3G60860.1;pid=486560;prot=eq;tid=486560 | + | scaffold_5 | No | |
| AL6G19890 | aly | name=fgenesh2_kg.6__1989__AT5G19610.1;pid=488855;prot=eq;tid=488855 | - | scaffold_6 | No | |
| AL7G00090 | aly | name=fgenesh2_kg.7__12__AT4G38200.1;pid=490579;prot=eq;tid=490579 | + | scaffold_7 | No | |
| AL7G05520 | aly | name=fgenesh2_kg.7__542__AT4G35380.1;pid=491109;prot=eq;tid=491109 | - | scaffold_7 | No | |
| AL7G35600 | aly | name=fgenesh1_pg.C_scaffold_7002946;pid=355773;prot=eq;tid=355773 | - | scaffold_7 | No | |
| AL7G38810 | aly | name=fgenesh2_kg.7__3470__AT5G39500.1;pid=494037;prot=eq;tid=494037 | - | scaffold_7 | No | |
| AT1G01960 | ath | embryo sac development arrest 10 (EDA10); FUNCTIONS IN: binding, ARF guanyl-nucleotide exchange factor activity, guanyl-nucleotide exchange factor activity; INVOLVED IN: megagametogenesis; LOCATED IN: cytosol, nucleus; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: SEC7-like (InterPro:IPR000904), Armadillo-type fold (InterPro:IPR016024), Protein of unknown function DUF1981, SEC7 associated (InterPro:IPR015403); BEST Arabidopsis thaliana protein match is: SEC7-like guanine nucleotide exchange family protein (TAIR:AT3G60860.1); Has 2904 Blast hits to 2648 proteins in 246 species: Archae - 0; Bacteria - 34; Metazoa - 1480; Fungi - 646; Plants - 300; Viruses - 0; Other Eukaryotes - 444 (source: NCBI BLink).;SEC7-like guanine nucleotide exchange family protein | transcript=eq;prot=eq; | - | 1 | No |
| AT1G13980 | ath | Encodes a GDP/GTP exchange factor for small G-proteins of the ADP ribosylation factor (RAF) class, and as regulator of intracellular trafficking. Homologous to Sec7p and YEC2 from yeast. Involved in the specification of apical-basal pattern formation. Essential for cell division, expansion and adhesion. It appears that heteotypic binding between the DCB and C-terminal domains of two GNOM proteins is required for membrane association, however, GNOM appears to exist predominantly as a heterodimer formed through DCB-DCB interactions.;sec7 domain-containing protein | transcript=eq;prot=eq; | + | 1 | No |
| AT3G43300 | ath | AtMIN7 is an immunity associated Arabidopsis protein targeted by HopM1, a conserved Pseudomonas syringae virulence protein. AtMIN7 encodes one of the eight members of the Arabidopsis adenosine diphosphate (ADP) ribosylation factor (ARF) guanine nucleotide exchange factor (GEF) protein family. The AFR GEF proteins are key components of the vesicle trafficking system in eukaryotic cells. HopM1 mediates the destruction of AtMIN7 via the host proteasome.;HOPM interactor 7 | transcript=eq;prot=eq; | - | 3 | No |
| AT3G60860 | ath | SEC7-like guanine nucleotide exchange family protein; FUNCTIONS IN: binding, ARF guanyl-nucleotide exchange factor activity, guanyl-nucleotide exchange factor activity; INVOLVED IN: regulation of ARF protein signal transduction; LOCATED IN: intracellular; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: SEC7-like (InterPro:IPR000904), Armadillo-type fold (InterPro:IPR016024), Protein of unknown function DUF1981, SEC7 associated (InterPro:IPR015403); BEST Arabidopsis thaliana protein match is: SEC7-like guanine nucleotide exchange family protein (TAIR:AT1G01960.1); Has 2962 Blast hits to 2694 proteins in 246 species: Archae - 0; Bacteria - 33; Metazoa - 1475; Fungi - 672; Plants - 315; Viruses - 0; Other Eukaryotes - 467 (source: NCBI BLink).;SEC7-like guanine nucleotide exchange family protein | transcript=eq;prot=eq; | + | 3 | No |
| AT4G35380 | ath | SEC7-like guanine nucleotide exchange family protein; FUNCTIONS IN: binding, ARF guanyl-nucleotide exchange factor activity, guanyl-nucleotide exchange factor activity; INVOLVED IN: regulation of ARF protein signal transduction; LOCATED IN: intracellular; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: SEC7-like (InterPro:IPR000904), Armadillo-type fold (InterPro:IPR016024), Protein of unknown function DUF1981, SEC7 associated (InterPro:IPR015403); BEST Arabidopsis thaliana protein match is: SEC7-like guanine nucleotide exchange family protein (TAIR:AT4G38200.1); Has 2864 Blast hits to 2569 proteins in 246 species: Archae - 2; Bacteria - 36; Metazoa - 1544; Fungi - 584; Plants - 258; Viruses - 0; Other Eukaryotes - 440 (source: NCBI BLink).;SEC7-like guanine nucleotide exchange family protein | transcript=eq;prot=eq; | + | 4 | No |
| AT4G38200 | ath | SEC7-like guanine nucleotide exchange family protein; FUNCTIONS IN: binding, ARF guanyl-nucleotide exchange factor activity, guanyl-nucleotide exchange factor activity; INVOLVED IN: regulation of ARF protein signal transduction; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: SEC7-like (InterPro:IPR000904), Armadillo-type fold (InterPro:IPR016024), Protein of unknown function DUF1981, SEC7 associated (InterPro:IPR015403); BEST Arabidopsis thaliana protein match is: SEC7-like guanine nucleotide exchange family protein (TAIR:AT4G35380.1); Has 2912 Blast hits to 2618 proteins in 244 species: Archae - 0; Bacteria - 32; Metazoa - 1541; Fungi - 604; Plants - 295; Viruses - 0; Other Eukaryotes - 440 (source: NCBI BLink).;SEC7-like guanine nucleotide exchange family protein | transcript=eq;prot=eq; | + | 4 | No |
| AT5G19610 | ath | GNOM-like 2 (GNL2); FUNCTIONS IN: ARF guanyl-nucleotide exchange factor activity; INVOLVED IN: pollen germination; LOCATED IN: intracellular; EXPRESSED IN: petal, leaf whorl, male gametophyte, flower, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: SEC7-like (InterPro:IPR000904); BEST Arabidopsis thaliana protein match is: sec7 domain-containing protein (TAIR:AT1G13980.2); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).;GNOM-like 2 | transcript=eq;prot=eq; | - | 5 | No |
| AT5G39500 | ath | Encodes GNOM-LIKE1/ERMO1, a member of ARF-GEF family. Required for endoplasmic reticulum (ER) morphology.;GNOM-like 1 | transcript=eq;prot=eq; | + | 5 | No |
| BD1G12920 | bdi | phosphatidylinositol binding, phosphatidylinositol-3,4,5-triphosphate binding (Blast2GO) | pid=Bradi1g12920.1;tid=Bradi1g12920.1;GeneName=Bradi1g12920;transcript=eq;prot=eq | - | Bd1 | No |
| BD1G12930 | bdi | pid=Bradi1g12930.1;tid=Bradi1g12930.1;GeneName=Bradi1g12930;transcript=eq;prot=eq | - | Bd1 | No |