Gene family  

Sub-families
ORTHO000148 (92 genes in 25 species)
ORTHO000281 (72 genes in 25 species)
ORTHO027249 (4 genes in 3 species)
View all sub-families (10)
 
Keywords


Overview of gene family content




aly
Arabidopsis lyrata (10 genes)
ath
Arabidopsis thaliana (8 genes)
bdi
Brachypodium distachyon (9 genes)
cpa
Carica papaya (13 genes)
cre
Chlamydomonas reinhardtii (3 genes)
fve
Fragaria vesca (10 genes)
gma
Glycine max (17 genes)
lja
Lotus japonicus (14 genes)
mdo
Malus domestica (20 genes)
mes
Manihot esculenta (11 genes)
mrcc299
Micromonas sp. RCC299 (3 genes)
mtr
Medicago truncatula (9 genes)
olu
Ostreococcus lucimarinus (3 genes)
osa
Oryza sativa ssp. japonica (10 genes)
osaindica
Oryza sativa ssp. indica (11 genes)
ota
Ostreococcus tauri (4 genes)
ppa
Physcomitrella patens (12 genes)
ptr
Populus trichocarpa (9 genes)
rco
Ricinus communis (10 genes)
sbi
Sorghum bicolor (9 genes)
smo
Selaginella moellendorffii (11 genes)
tca
Theobroma cacao (8 genes)
vca
Volvox carteri (3 genes)
vvi
Vitis vinifera (5 genes)
zma
Zea mays (11 genes)



The gene family HOM000397 has 233 genes in 25 species (19 outlier genes).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
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Index of genes with 1 constraints:

Page 1 of 12, showing 20 records out of 233 total, starting on record 1, ending on 20

gene_id species description comment strand chr outlier
AL1G00340 aly name=fgenesh2_kg.1__32__AT1G01960.1;pid=470078;prot=eq;tid=470078 + scaffold_1 No
AL1G14720 aly name=fgenesh2_kg.1__1513__AT1G13980.1;pid=471559;prot=eq;tid=471559 + scaffold_1 No
AL1G29360 aly name=scaffold_103151.1;pid=890357;prot=eq;tid=921870 - scaffold_1 No
AL5G10950 aly name=Al_scaffold_0005_1053;pid=865574;prot=eq;tid=897087 - scaffold_5 No
AL5G31570 aly name=fgenesh2_kg.5__2552__AT3G60860.1;pid=486560;prot=eq;tid=486560 + scaffold_5 No
AL6G19890 aly name=fgenesh2_kg.6__1989__AT5G19610.1;pid=488855;prot=eq;tid=488855 - scaffold_6 No
AL7G00090 aly name=fgenesh2_kg.7__12__AT4G38200.1;pid=490579;prot=eq;tid=490579 + scaffold_7 No
AL7G05520 aly name=fgenesh2_kg.7__542__AT4G35380.1;pid=491109;prot=eq;tid=491109 - scaffold_7 No
AL7G35600 aly name=fgenesh1_pg.C_scaffold_7002946;pid=355773;prot=eq;tid=355773 - scaffold_7 No
AL7G38810 aly name=fgenesh2_kg.7__3470__AT5G39500.1;pid=494037;prot=eq;tid=494037 - scaffold_7 No
AT1G01960 ath embryo sac development arrest 10 (EDA10); FUNCTIONS IN: binding, ARF guanyl-nucleotide exchange factor activity, guanyl-nucleotide exchange factor activity; INVOLVED IN: megagametogenesis; LOCATED IN: cytosol, nucleus; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: SEC7-like (InterPro:IPR000904), Armadillo-type fold (InterPro:IPR016024), Protein of unknown function DUF1981, SEC7 associated (InterPro:IPR015403); BEST Arabidopsis thaliana protein match is: SEC7-like guanine nucleotide exchange family protein (TAIR:AT3G60860.1); Has 2904 Blast hits to 2648 proteins in 246 species: Archae - 0; Bacteria - 34; Metazoa - 1480; Fungi - 646; Plants - 300; Viruses - 0; Other Eukaryotes - 444 (source: NCBI BLink).;SEC7-like guanine nucleotide exchange family protein transcript=eq;prot=eq; - 1 No
AT1G13980 ath Encodes a GDP/GTP exchange factor for small G-proteins of the ADP ribosylation factor (RAF) class, and as regulator of intracellular trafficking. Homologous to Sec7p and YEC2 from yeast. Involved in the specification of apical-basal pattern formation. Essential for cell division, expansion and adhesion. It appears that heteotypic binding between the DCB and C-terminal domains of two GNOM proteins is required for membrane association, however, GNOM appears to exist predominantly as a heterodimer formed through DCB-DCB interactions.;sec7 domain-containing protein transcript=eq;prot=eq; + 1 No
AT3G43300 ath AtMIN7 is an immunity associated Arabidopsis protein targeted by HopM1, a conserved Pseudomonas syringae virulence protein. AtMIN7 encodes one of the eight members of the Arabidopsis adenosine diphosphate (ADP) ribosylation factor (ARF) guanine nucleotide exchange factor (GEF) protein family. The AFR GEF proteins are key components of the vesicle trafficking system in eukaryotic cells. HopM1 mediates the destruction of AtMIN7 via the host proteasome.;HOPM interactor 7 transcript=eq;prot=eq; - 3 No
AT3G60860 ath SEC7-like guanine nucleotide exchange family protein; FUNCTIONS IN: binding, ARF guanyl-nucleotide exchange factor activity, guanyl-nucleotide exchange factor activity; INVOLVED IN: regulation of ARF protein signal transduction; LOCATED IN: intracellular; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: SEC7-like (InterPro:IPR000904), Armadillo-type fold (InterPro:IPR016024), Protein of unknown function DUF1981, SEC7 associated (InterPro:IPR015403); BEST Arabidopsis thaliana protein match is: SEC7-like guanine nucleotide exchange family protein (TAIR:AT1G01960.1); Has 2962 Blast hits to 2694 proteins in 246 species: Archae - 0; Bacteria - 33; Metazoa - 1475; Fungi - 672; Plants - 315; Viruses - 0; Other Eukaryotes - 467 (source: NCBI BLink).;SEC7-like guanine nucleotide exchange family protein transcript=eq;prot=eq; + 3 No
AT4G35380 ath SEC7-like guanine nucleotide exchange family protein; FUNCTIONS IN: binding, ARF guanyl-nucleotide exchange factor activity, guanyl-nucleotide exchange factor activity; INVOLVED IN: regulation of ARF protein signal transduction; LOCATED IN: intracellular; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: SEC7-like (InterPro:IPR000904), Armadillo-type fold (InterPro:IPR016024), Protein of unknown function DUF1981, SEC7 associated (InterPro:IPR015403); BEST Arabidopsis thaliana protein match is: SEC7-like guanine nucleotide exchange family protein (TAIR:AT4G38200.1); Has 2864 Blast hits to 2569 proteins in 246 species: Archae - 2; Bacteria - 36; Metazoa - 1544; Fungi - 584; Plants - 258; Viruses - 0; Other Eukaryotes - 440 (source: NCBI BLink).;SEC7-like guanine nucleotide exchange family protein transcript=eq;prot=eq; + 4 No
AT4G38200 ath SEC7-like guanine nucleotide exchange family protein; FUNCTIONS IN: binding, ARF guanyl-nucleotide exchange factor activity, guanyl-nucleotide exchange factor activity; INVOLVED IN: regulation of ARF protein signal transduction; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: SEC7-like (InterPro:IPR000904), Armadillo-type fold (InterPro:IPR016024), Protein of unknown function DUF1981, SEC7 associated (InterPro:IPR015403); BEST Arabidopsis thaliana protein match is: SEC7-like guanine nucleotide exchange family protein (TAIR:AT4G35380.1); Has 2912 Blast hits to 2618 proteins in 244 species: Archae - 0; Bacteria - 32; Metazoa - 1541; Fungi - 604; Plants - 295; Viruses - 0; Other Eukaryotes - 440 (source: NCBI BLink).;SEC7-like guanine nucleotide exchange family protein transcript=eq;prot=eq; + 4 No
AT5G19610 ath GNOM-like 2 (GNL2); FUNCTIONS IN: ARF guanyl-nucleotide exchange factor activity; INVOLVED IN: pollen germination; LOCATED IN: intracellular; EXPRESSED IN: petal, leaf whorl, male gametophyte, flower, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: SEC7-like (InterPro:IPR000904); BEST Arabidopsis thaliana protein match is: sec7 domain-containing protein (TAIR:AT1G13980.2); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).;GNOM-like 2 transcript=eq;prot=eq; - 5 No
AT5G39500 ath Encodes GNOM-LIKE1/ERMO1, a member of ARF-GEF family. Required for endoplasmic reticulum (ER) morphology.;GNOM-like 1 transcript=eq;prot=eq; + 5 No
BD1G12920 bdi phosphatidylinositol binding, phosphatidylinositol-3,4,5-triphosphate binding (Blast2GO) pid=Bradi1g12920.1;tid=Bradi1g12920.1;GeneName=Bradi1g12920;transcript=eq;prot=eq - Bd1 No
BD1G12930 bdi pid=Bradi1g12930.1;tid=Bradi1g12930.1;GeneName=Bradi1g12930;transcript=eq;prot=eq - Bd1 No
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