Gene family  

Sub-families
ORTHO000838 (46 genes in 25 species)
ORTHO003256 (29 genes in 23 species)
ORTHO006335 (24 genes in 18 species)
View all sub-families (18)
 
Keywords


Overview of gene family content




aly
Arabidopsis lyrata (9 genes)
ath
Arabidopsis thaliana (11 genes)
bdi
Brachypodium distachyon (8 genes)
cpa
Carica papaya (9 genes)
cre
Chlamydomonas reinhardtii (5 genes)
fve
Fragaria vesca (23 genes)
gma
Glycine max (18 genes)
lja
Lotus japonicus (10 genes)
mdo
Malus domestica (11 genes)
mes
Manihot esculenta (13 genes)
mrcc299
Micromonas sp. RCC299 (4 genes)
mtr
Medicago truncatula (9 genes)
olu
Ostreococcus lucimarinus (3 genes)
osa
Oryza sativa ssp. japonica (13 genes)
osaindica
Oryza sativa ssp. indica (13 genes)
ota
Ostreococcus tauri (3 genes)
ppa
Physcomitrella patens (6 genes)
ptr
Populus trichocarpa (16 genes)
rco
Ricinus communis (8 genes)
sbi
Sorghum bicolor (8 genes)
smo
Selaginella moellendorffii (6 genes)
tca
Theobroma cacao (6 genes)
vca
Volvox carteri (5 genes)
vvi
Vitis vinifera (7 genes)
zma
Zea mays (10 genes)



The gene family HOM000395 has 234 genes in 25 species (7 outlier genes).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
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Index of genes with 1 constraints:

Page 1 of 12, showing 20 records out of 234 total, starting on record 1, ending on 20

gene_id species description comment strand chr outlier
AL0G02980 aly name=scaffold_5200003.1;pid=920763;prot=eq;tid=952276 + scaffold_52 No
AL0G02990 aly name=Al_scaffold_0052_3;pid=856088;prot=eq;tid=887601 + scaffold_52 No
AL2G10360 aly name=fgenesh2_kg.2__715__ATCG00050.1;pid=475585;prot=eq;tid=475585 + scaffold_2 No
AL3G14410 aly name=fgenesh1_pm.C_scaffold_3001175;pid=318159;prot=eq;tid=318159 + scaffold_3 No
AL3G36710 aly name=fgenesh2_kg.3__3225__AT2G19480.2;pid=480524;prot=eq;tid=480524 - scaffold_3 No
AL7G06300 aly name=scaffold_700665.1;pid=912923;prot=eq;tid=944436 + scaffold_7 No
AL7G15950 aly name=fgenesh2_kg.7__1636__AT4G26110.1;pid=492203;prot=eq;tid=492203 - scaffold_7 No
AL8G22560 aly name=scaffold_802253.1;pid=918853;prot=eq;tid=950366 + scaffold_8 No
AL8G22570 aly name=fgenesh1_pg.C_scaffold_8001699;pid=357912;prot=eq;tid=357912 + scaffold_8 No
AT1G79050 ath recA DNA recombination family protein; FUNCTIONS IN: in 6 functions; INVOLVED IN: DNA repair, SOS response, DNA recombination, DNA metabolic process; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: DNA recombination/repair protein RecA/RadB, ATP-binding domain (InterPro:IPR020588), ATPase, AAA+ type, core (InterPro:IPR003593), DNA recombination/repair protein RecA, conserved site (InterPro:IPR020584), DNA recombination and repair protein RecA (InterPro:IPR013765), DNA recombination/repair protein RecA, monomer-monomer interface (InterPro:IPR020587); BEST Arabidopsis thaliana protein match is: recA DNA recombination family protein (TAIR:AT2G19490.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).;recA DNA recombination family protein transcript=eq;prot=eq; - 1 No
AT2G19480 ath This gene is predicted to encode a nucleosome assembly protein. Plant lines expressing an RNAi construct directed against this gene show a reduction in agrobacterium-mediated root transformation.;nucleosome assembly protein 1;2 transcript=eq;prot=eq; + 2 No
AT2G19490 ath recA DNA recombination family protein; FUNCTIONS IN: in 6 functions; INVOLVED IN: DNA repair, SOS response, DNA recombination, DNA metabolic process; CONTAINS InterPro DOMAIN/s: DNA recombination/repair protein RecA/RadB, ATP-binding domain (InterPro:IPR020588), ATPase, AAA+ type, core (InterPro:IPR003593), DNA recombination/repair protein RecA, conserved site (InterPro:IPR020584), DNA recombination and repair protein RecA (InterPro:IPR013765), DNA recombination/repair protein RecA, monomer-monomer interface (InterPro:IPR020587); BEST Arabidopsis thaliana protein match is: P-loop containing nucleoside triphosphate hydrolases superfamily protein (TAIR:AT3G32920.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).;recA DNA recombination family protein transcript=eq;prot=eq; + 2 No
AT3G10140 ath RECA homolog 3 (RECA3); FUNCTIONS IN: in 6 functions; INVOLVED IN: DNA repair, SOS response, DNA recombination, DNA metabolic process; LOCATED IN: mitochondrion; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: DNA recombination/repair protein RecA/RadB, ATP-binding domain (InterPro:IPR020588), ATPase, AAA+ type, core (InterPro:IPR003593), DNA recombination and repair protein RecA (InterPro:IPR013765), DNA recombination/repair protein RecA, monomer-monomer interface (InterPro:IPR020587); BEST Arabidopsis thaliana protein match is: recA DNA recombination family protein (TAIR:AT2G19490.1); Has 19406 Blast hits to 19280 proteins in 5632 species: Archae - 329; Bacteria - 14407; Metazoa - 165; Fungi - 231; Plants - 211; Viruses - 99; Other Eukaryotes - 3964 (source: NCBI BLink).;RECA homolog 3 transcript=eq;prot=eq; + 3 No
AT3G13782 ath nucleosome assembly protein1;4 (NAP1;4); FUNCTIONS IN: chromatin binding, DNA binding; INVOLVED IN: response to cadmium ion, nucleosome assembly, nucleotide-excision repair; LOCATED IN: nucleus, cytoplasm; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis; CONTAINS InterPro DOMAIN/s: Nucleosome assembly protein (NAP) (InterPro:IPR002164); BEST Arabidopsis thaliana protein match is: nucleosome assembly protein 1;2 (TAIR:AT2G19480.3); Has 1671 Blast hits to 1646 proteins in 262 species: Archae - 0; Bacteria - 0; Metazoa - 1036; Fungi - 206; Plants - 209; Viruses - 0; Other Eukaryotes - 220 (source: NCBI BLink).;nucleosome assembly protein1;4 transcript=eq;prot=eq; + 3 No
AT3G32920 ath P-loop containing nucleoside triphosphate hydrolases superfamily protein; FUNCTIONS IN: in 6 functions; INVOLVED IN: DNA repair, SOS response, DNA recombination, DNA metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: male gametophyte, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; CONTAINS InterPro DOMAIN/s: DNA recombination/repair protein RecA/RadB, ATP-binding domain (InterPro:IPR020588), ATPase, AAA+ type, core (InterPro:IPR003593), DNA recombination and repair protein RecA (InterPro:IPR013765), DNA recombination/repair protein RecA, monomer-monomer interface (InterPro:IPR020587); BEST Arabidopsis thaliana protein match is: recA DNA recombination family protein (TAIR:AT2G19490.1); Has 17255 Blast hits to 17200 proteins in 5414 species: Archae - 42; Bacteria - 14123; Metazoa - 1; Fungi - 5; Plants - 108; Viruses - 52; Other Eukaryotes - 2924 (source: NCBI BLink).;P-loop containing nucleoside triphosphate hydrolases superfamily protein transcript=eq;prot=eq; - 3 No
AT4G26110 ath Encodes a member of a small gene family of proteins with similarity to nucleosome assembly proteins.May function in nucleotide excision repair. Loss of function mutations have no obvious visible phenotypes but do seem to affect transcription of NER related genes.;nucleosome assembly protein1;1 transcript=eq;prot=eq; + 4 No
AT4G34620 ath Encodes ribosomal protein S16, has embryo-defective lethal mutant phenotype;small subunit ribosomal protein 16 transcript=eq;prot=eq; - 4 No
AT5G56940 ath Ribosomal protein S16 family protein; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation, ribosome biogenesis; LOCATED IN: mitochondrion, ribosome, plastid; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein S16 (InterPro:IPR000307); BEST Arabidopsis thaliana protein match is: small subunit ribosomal protein 16 (TAIR:AT4G34620.1); Has 8528 Blast hits to 8528 proteins in 2923 species: Archae - 0; Bacteria - 5438; Metazoa - 128; Fungi - 129; Plants - 517; Viruses - 0; Other Eukaryotes - 2316 (source: NCBI BLink).;Ribosomal protein S16 family protein transcript=eq;prot=eq; + 5 No
AT5G56950 ath Encodes a member of a small gene family of proteins with similarity to nucleosome assembly proteins.May function in nucleotide excision repair. Loss of function mutations have no obvious visible phenotypes but do seem to affect transcription of NER related genes.;nucleosome assembly protein 1;3 transcript=eq;prot=eq; + 5 No
ATCG00050 ath Homologous to the bacterial ribosomal protein S16;ribosomal protein S16 transcript=eq;prot=eq; - chloroplast No
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