Gene family  

Sub-families
ORTHO000514 (55 genes in 20 species)
ORTHO011866 (16 genes in 12 species)
ORTHO011877 (16 genes in 11 species)
View all sub-families (23)
 
Keywords


Overview of gene family content




aly
Arabidopsis lyrata (13 genes)
ath
Arabidopsis thaliana (10 genes)
bdi
Brachypodium distachyon (10 genes)
cpa
Carica papaya (5 genes)
fve
Fragaria vesca (8 genes)
gma
Glycine max (25 genes)
lja
Lotus japonicus (16 genes)
mdo
Malus domestica (17 genes)
mes
Manihot esculenta (16 genes)
mtr
Medicago truncatula (11 genes)
osa
Oryza sativa ssp. japonica (15 genes)
osaindica
Oryza sativa ssp. indica (12 genes)
ppa
Physcomitrella patens (4 genes)
ptr
Populus trichocarpa (17 genes)
rco
Ricinus communis (6 genes)
sbi
Sorghum bicolor (11 genes)
smo
Selaginella moellendorffii (2 genes)
tca
Theobroma cacao (9 genes)
vvi
Vitis vinifera (8 genes)
zma
Zea mays (20 genes)



The gene family HOM000394 has 235 genes in 20 species (2 outlier genes).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
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Index of genes with 1 constraints:

Page 1 of 12, showing 20 records out of 235 total, starting on record 1, ending on 20

gene_id species description comment strand chr outlier
AL0G05420 aly name=fgenesh2_kg.163__1__AT2G31160.1;pid=497295;prot=eq;tid=497295 - scaffold_163 No
AL0G05910 aly name=scaffold_20100001.1;pid=920315;prot=eq;tid=951828 - scaffold_201 No
AL1G06680 aly name=scaffold_100712.1;pid=887918;prot=eq;tid=919431 - scaffold_1 No
AL2G27850 aly name=scaffold_202856.1;pid=895782;prot=eq;tid=927295 - scaffold_2 No
AL3G04150 aly name=fgenesh2_kg.3__408__AT3G04510.1;pid=477707;prot=eq;tid=477707 - scaffold_3 No
AL3G25920 aly name=scaffold_302812.1;pid=898842;prot=eq;tid=930355 + scaffold_3 No
AL4G14670 aly name=scaffold_401489.1;pid=901988;prot=eq;tid=933501 + scaffold_4 No
AL4G16010 aly name=fgenesh1_pg.C_scaffold_4001226;pid=344884;prot=eq;tid=344884 + scaffold_4 No
AL4G30000 aly name=scaffold_403135.1;pid=903634;prot=eq;tid=935147 + scaffold_4 No
AL6G28780 aly name=fgenesh2_kg.6__2784__AT5G28490.1;pid=489650;prot=eq;tid=489650 - scaffold_6 No
AL7G24060 aly name=scaffold_702560.1;pid=914818;prot=eq;tid=946331 - scaffold_7 No
AL8G02530 aly name=scaffold_800264.1;pid=916864;prot=eq;tid=948377 + scaffold_8 No
AL8G24430 aly name=scaffold_802448.1;pid=919048;prot=eq;tid=950561 - scaffold_8 No
AT1G07090 ath LIGHT SENSITIVE HYPOCOTYLS 6 (LSH6); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF640 (InterPro:IPR006936); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF640) (TAIR:AT5G58500.1); Has 311 Blast hits to 311 proteins in 18 species: Archae - 0; Bacteria - 0; Metazoa - 14; Fungi - 0; Plants - 297; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).;Protein of unknown function (DUF640) transcript=eq;prot=eq; - 1 No
AT1G16910 ath LIGHT SENSITIVE HYPOCOTYLS 8 (LSH8); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF640 (InterPro:IPR006936); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF640) (TAIR:AT1G78815.1); Has 310 Blast hits to 310 proteins in 18 species: Archae - 0; Bacteria - 0; Metazoa - 14; Fungi - 0; Plants - 296; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).;Protein of unknown function (DUF640) transcript=eq;prot=eq; + 1 No
AT1G78815 ath LIGHT SENSITIVE HYPOCOTYLS 7 (LSH7); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: inflorescence meristem, hypocotyl, root, flower; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF640 (InterPro:IPR006936); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF640) (TAIR:AT1G16910.1); Has 309 Blast hits to 309 proteins in 18 species: Archae - 0; Bacteria - 0; Metazoa - 12; Fungi - 0; Plants - 297; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).;Protein of unknown function (DUF640) transcript=eq;prot=eq; - 1 No
AT2G31160 ath LIGHT SENSITIVE HYPOCOTYLS 3 (LSH3); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF640 (InterPro:IPR006936); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF640) (TAIR:AT1G07090.1); Has 309 Blast hits to 309 proteins in 18 species: Archae - 0; Bacteria - 0; Metazoa - 12; Fungi - 0; Plants - 297; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).;Protein of unknown function (DUF640) transcript=eq;prot=eq; + 2 No
AT2G42610 ath LIGHT SENSITIVE HYPOCOTYLS 10 (LSH10); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF640 (InterPro:IPR006936); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF640) (TAIR:AT1G07090.1); Has 309 Blast hits to 309 proteins in 18 species: Archae - 0; Bacteria - 0; Metazoa - 12; Fungi - 0; Plants - 297; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).;Protein of unknown function (DUF640) transcript=eq;prot=eq; + 2 No
AT3G04510 ath LIGHT SENSITIVE HYPOCOTYLS 2 (LSH2); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 4 leaf senescence stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF640 (InterPro:IPR006936); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF640) (TAIR:AT5G28490.1); Has 309 Blast hits to 309 proteins in 18 species: Archae - 0; Bacteria - 0; Metazoa - 12; Fungi - 0; Plants - 297; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).;Protein of unknown function (DUF640) transcript=eq;prot=eq; - 3 No
AT3G23290 ath LIGHT SENSITIVE HYPOCOTYLS 4 (LSH4); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF640 (InterPro:IPR006936); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF640) (TAIR:AT2G31160.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).;Protein of unknown function (DUF640) transcript=eq;prot=eq; + 3 No
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