Gene family  

Sub-families
ORTHO004260 (27 genes in 14 species)
ORTHO006391 (24 genes in 17 species)
ORTHO008461 (21 genes in 12 species)
View all sub-families (27)
 
Keywords


Overview of gene family content




aly
Arabidopsis lyrata (13 genes)
ath
Arabidopsis thaliana (11 genes)
bdi
Brachypodium distachyon (11 genes)
cpa
Carica papaya (7 genes)
fve
Fragaria vesca (11 genes)
gma
Glycine max (25 genes)
lja
Lotus japonicus (7 genes)
mdo
Malus domestica (35 genes)
mes
Manihot esculenta (13 genes)
mtr
Medicago truncatula (9 genes)
osa
Oryza sativa ssp. japonica (15 genes)
osaindica
Oryza sativa ssp. indica (15 genes)
ppa
Physcomitrella patens (1 gene)
ptr
Populus trichocarpa (18 genes)
rco
Ricinus communis (8 genes)
sbi
Sorghum bicolor (13 genes)
smo
Selaginella moellendorffii (1 gene)
tca
Theobroma cacao (9 genes)
vvi
Vitis vinifera (6 genes)
zma
Zea mays (17 genes)



The gene family HOM000372 has 245 genes in 20 species (8 outlier genes).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
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Index of genes with 1 constraints:

Page 1 of 13, showing 20 records out of 245 total, starting on record 1, ending on 20

gene_id species description comment strand chr outlier
AL1G02160 aly name=fgenesh2_kg.1__215__AT1G02900.1;pid=470261;prot=eq;tid=470261 - scaffold_1 No
AL1G29440 aly name=fgenesh2_kg.1__2990__AT1G28270.1;pid=473036;prot=eq;tid=473036 + scaffold_1 No
AL2G15230 aly name=fgenesh2_kg.2__966__AT1G67360.2;pid=475836;prot=eq;tid=475836 - scaffold_2 No
AL3G05400 aly name=fgenesh2_kg.3__539__AT3G05490.1;pid=477838;prot=eq;tid=477838 + scaffold_3 No
AL3G05410 aly name=fgenesh2_kg.3__540__AT3G05500.1;pid=477839;prot=eq;tid=477839 + scaffold_3 No
AL3G17720 aly name=scaffold_301945.1;pid=897975;prot=eq;tid=929488 + scaffold_3 No
AL3G26680 aly name=scaffold_302888.1;pid=898918;prot=eq;tid=930431 - scaffold_3 No
AL4G19030 aly name=scaffold_401954.1;pid=902453;prot=eq;tid=933966 + scaffold_4 No
AL4G35970 aly name=scaffold_403754.1;pid=904253;prot=eq;tid=935766 + scaffold_4 No
AL6G27540 aly name=scaffold_602867.1;pid=910810;prot=eq;tid=942323 - scaffold_6 No
AL7G13490 aly name=scaffold_701428.1;pid=913686;prot=eq;tid=945199 + scaffold_7 No
AL7G27790 aly name=fgenesh2_kg.7__2737__AT4G15800.1;pid=493304;prot=eq;tid=493304 - scaffold_7 No
AL7G30660 aly name=fgenesh2_kg.7__2951__AT4G13950.1;pid=493518;prot=eq;tid=493518 + scaffold_7 No
AT1G02900 ath Member of a diversely expressed predicted peptide family showing sequence similarity to tobacco Rapid Alkalinization Factor (RALF), and is believed to play an essential role in the physiology of Arabidopsis. Consists of a single exon and is characterized by a conserved C-terminal motif and N-terminal signal peptide. Mediates Ca2+-dependent signaling.;rapid alkalinization factor 1 transcript=eq;prot=eq; - 1 No
AT1G28270 ath Member of a diversely expressed predicted peptide family showing sequence similarity to tobacco Rapid Alkalinization Factor (RALF), and is believed to play an essential role in the physiology of Arabidopsis. Consists of a single exon and is characterized by a conserved C-terminal motif and N-terminal signal peptide.;ralf-like 4 transcript=eq;prot=eq; + 1 No
AT1G67360 ath Rubber elongation factor protein (REF); INVOLVED IN: biological_process unknown; LOCATED IN: vacuole; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Rubber elongation factor (InterPro:IPR008802); BEST Arabidopsis thaliana protein match is: Rubber elongation factor protein (REF) (TAIR:AT2G47780.1); Has 125 Blast hits to 125 proteins in 21 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 125; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).;Rubber elongation factor protein (REF) transcript=eq;prot=eq; - 1 No
AT2G33775 ath Member of a diversely expressed predicted peptide family showing sequence similarity to tobacco Rapid Alkalinization Factor (RALF), and is believed to play an essential role in the physiology of Arabidopsis. Consists of a single exon and is characterized by a conserved C-terminal motif and N-terminal signal peptide.;ralf-like 19 transcript=eq;prot=eq; + 2 No
AT2G47780 ath Rubber elongation factor protein (REF); CONTAINS InterPro DOMAIN/s: Rubber elongation factor (InterPro:IPR008802); BEST Arabidopsis thaliana protein match is: Rubber elongation factor protein (REF) (TAIR:AT3G05500.1); Has 126 Blast hits to 126 proteins in 21 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 126; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).;Rubber elongation factor protein (REF) transcript=eq;prot=eq; + 2 No
AT3G05490 ath Member of a diversely expressed predicted peptide family showing sequence similarity to tobacco Rapid Alkalinization Factor (RALF), and is believed to play an essential role in the physiology of Arabidopsis. Consists of a single exon and is characterized by a conserved C-terminal motif and N-terminal signal peptide.;ralf-like 22 transcript=eq;prot=eq; + 3 No
AT3G05500 ath Rubber elongation factor protein (REF); INVOLVED IN: biological_process unknown; LOCATED IN: vacuole; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Rubber elongation factor (InterPro:IPR008802); BEST Arabidopsis thaliana protein match is: Rubber elongation factor protein (REF) (TAIR:AT2G47780.1); Has 129 Blast hits to 129 proteins in 22 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 129; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).;Rubber elongation factor protein (REF) transcript=eq;prot=eq; + 3 No
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