Gene family  

Sub-families
ORTHO001368 (39 genes in 19 species)
ORTHO002177 (33 genes in 21 species)
ORTHO003454 (29 genes in 17 species)
View all sub-families (13)
 
Keywords


Overview of gene family content




aly
Arabidopsis lyrata (12 genes)
ath
Arabidopsis thaliana (9 genes)
bdi
Brachypodium distachyon (11 genes)
cpa
Carica papaya (9 genes)
cre
Chlamydomonas reinhardtii (3 genes)
fve
Fragaria vesca (11 genes)
gma
Glycine max (18 genes)
lja
Lotus japonicus (9 genes)
mdo
Malus domestica (40 genes)
mes
Manihot esculenta (12 genes)
mrcc299
Micromonas sp. RCC299 (2 genes)
mtr
Medicago truncatula (5 genes)
olu
Ostreococcus lucimarinus (2 genes)
osa
Oryza sativa ssp. japonica (11 genes)
osaindica
Oryza sativa ssp. indica (13 genes)
ota
Ostreococcus tauri (2 genes)
ppa
Physcomitrella patens (8 genes)
ptr
Populus trichocarpa (13 genes)
rco
Ricinus communis (8 genes)
sbi
Sorghum bicolor (10 genes)
smo
Selaginella moellendorffii (2 genes)
tca
Theobroma cacao (11 genes)
vca
Volvox carteri (2 genes)
vvi
Vitis vinifera (9 genes)
zma
Zea mays (16 genes)



The gene family HOM000363 has 248 genes in 25 species (8 outlier genes).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
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Index of genes with 1 constraints:

Page 1 of 13, showing 20 records out of 248 total, starting on record 1, ending on 20

gene_id species description comment strand chr outlier
AL0G07980 aly name=Al_scaffold_0371_3;pid=856241;prot=eq;tid=887754 + scaffold_371 No
AL0G11490 aly name=Al_scaffold_0962_2;pid=855924;prot=eq;tid=887437 + scaffold_962 No
AL3G06490 aly name=fgenesh1_pm.C_scaffold_3000516;pid=317500;prot=eq;tid=317500 - scaffold_3 No
AL3G27570 aly name=fgenesh2_kg.3__2641__AT3G23920.1;pid=479940;prot=eq;tid=479940 - scaffold_3 No
AL4G17330 aly name=fgenesh2_kg.4__1218__AT2G32290.1;pid=482158;prot=eq;tid=482158 - scaffold_4 No
AL4G33850 aly name=fgenesh1_pg.C_scaffold_4002740;pid=346398;prot=eq;tid=346398 - scaffold_4 No
AL6G18750 aly name=scaffold_601938.1;pid=909881;prot=eq;tid=941394 + scaffold_6 No
AL6G41140 aly name=fgenesh2_kg.6__3651__AT4G00490.1;pid=490517;prot=eq;tid=490517 - scaffold_6 No
AL7G25970 aly name=scaffold_702752.1;pid=915010;prot=eq;tid=946523 + scaffold_7 No
AL7G28680 aly name=fgenesh2_kg.7__2803__AT4G15210.1;pid=493370;prot=eq;tid=493370 + scaffold_7 No
AL8G03300 aly name=fgenesh1_pg.C_scaffold_8000271;pid=356484;prot=eq;tid=356484 - scaffold_8 No
AL8G21100 aly name=fgenesh2_kg.8__1472__AT5G55700.1;pid=495656;prot=eq;tid=495656 + scaffold_8 No
AT2G32290 ath beta-amylase 6 (BAM6); FUNCTIONS IN: cation binding, beta-amylase activity, catalytic activity; INVOLVED IN: cellulose biosynthetic process, carbohydrate metabolic process, polysaccharide catabolic process; LOCATED IN: chloroplast; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, family 14, conserved site (InterPro:IPR018238), Glycoside hydrolase, family 14 (InterPro:IPR001554), Glycoside hydrolase, catalytic core (InterPro:IPR017853), Glycoside hydrolase, family 14B, plant (InterPro:IPR001371), Glycoside hydrolase, subgroup, catalytic core (InterPro:IPR013781); BEST Arabidopsis thaliana protein match is: beta-amylase 5 (TAIR:AT4G15210.1); Has 842 Blast hits to 841 proteins in 166 species: Archae - 0; Bacteria - 87; Metazoa - 0; Fungi - 0; Plants - 690; Viruses - 0; Other Eukaryotes - 65 (source: NCBI BLink).;beta-amylase 6 transcript=eq;prot=eq; - 2 No
AT2G45880 ath beta-amylase 7 (BAM7); FUNCTIONS IN: cation binding, beta-amylase activity, catalytic activity; INVOLVED IN: cellulose biosynthetic process, carbohydrate metabolic process, polysaccharide catabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, family 14, conserved site (InterPro:IPR018238), Glycoside hydrolase, family 14 (InterPro:IPR001554), Glycoside hydrolase, catalytic core (InterPro:IPR017853), Glycoside hydrolase, subgroup, catalytic core (InterPro:IPR013781), BZR1, transcriptional repressor (InterPro:IPR008540); BEST Arabidopsis thaliana protein match is: beta-amylase 2 (TAIR:AT4G00490.1); Has 965 Blast hits to 963 proteins in 157 species: Archae - 0; Bacteria - 86; Metazoa - 0; Fungi - 3; Plants - 810; Viruses - 0; Other Eukaryotes - 66 (source: NCBI BLink).;beta-amylase 7 transcript=eq;prot=eq; - 2 No
AT3G23920 ath Encodes a chloroplast beta-amylase. Is necessary for leaf starch breakdown in the absence of BAM3.;beta-amylase 1 transcript=eq;prot=eq; + 3 No
AT4G00490 ath Encodes a chloroplast beta-amylase. The enzyme activity is very weak compared to BAM1 and BAM3. Mutant of BAM2 has no visible phenotype.;beta-amylase 2 transcript=eq;prot=eq; + 4 No
AT4G15210 ath cytosolic beta-amylase expressed in rosette leaves and inducible by sugar. RAM1 mutants have reduced beta amylase in leaves and stems.;beta-amylase 5 transcript=eq;prot=eq; - 4 No
AT4G17090 ath Encodes a beta-amylase targeted to the chloroplast. Transgenic BMY8 RNAi lines fail to accumulate maltose during cold shock suggesting that maltose accumulation coincides with BMY8 expression. Apart from maltose, the sugar content of the RNAi lines were similar to wildtype (glucose and sucrose unaffected).;chloroplast beta-amylase transcript=eq;prot=eq; - 4 No
AT5G18670 ath putative beta-amylase BMY3 (BMY3);beta-amylase 3 transcript=eq;prot=eq; + 5 No
AT5G45300 ath beta-amylase 2 (BMY2); FUNCTIONS IN: cation binding, beta-amylase activity, catalytic activity; INVOLVED IN: cellulose biosynthetic process, carbohydrate metabolic process, polysaccharide catabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, family 14 (InterPro:IPR001554), Glycoside hydrolase, catalytic core (InterPro:IPR017853), Glycoside hydrolase, subgroup, catalytic core (InterPro:IPR013781), BZR1, transcriptional repressor (InterPro:IPR008540); BEST Arabidopsis thaliana protein match is: beta-amylase 7 (TAIR:AT2G45880.1); Has 1218 Blast hits to 1198 proteins in 187 species: Archae - 0; Bacteria - 92; Metazoa - 210; Fungi - 10; Plants - 824; Viruses - 0; Other Eukaryotes - 82 (source: NCBI BLink).;beta-amylase 2 transcript=eq;prot=eq; + 5 No
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