Gene family  

Sub-families
ORTHO002480 (32 genes in 21 species)
ORTHO006506 (24 genes in 18 species)
ORTHO007254 (23 genes in 12 species)
View all sub-families (27)
 
Keywords


Overview of gene family content




aly
Arabidopsis lyrata (13 genes)
ath
Arabidopsis thaliana (10 genes)
bdi
Brachypodium distachyon (7 genes)
cpa
Carica papaya (6 genes)
cre
Chlamydomonas reinhardtii (1 gene)
fve
Fragaria vesca (10 genes)
gma
Glycine max (25 genes)
lja
Lotus japonicus (6 genes)
mdo
Malus domestica (15 genes)
mes
Manihot esculenta (14 genes)
mrcc299
Micromonas sp. RCC299 (1 gene)
mtr
Medicago truncatula (12 genes)
olu
Ostreococcus lucimarinus (1 gene)
osa
Oryza sativa ssp. japonica (17 genes)
osaindica
Oryza sativa ssp. indica (23 genes)
ppa
Physcomitrella patens (7 genes)
ptr
Populus trichocarpa (12 genes)
rco
Ricinus communis (8 genes)
sbi
Sorghum bicolor (11 genes)
smo
Selaginella moellendorffii (10 genes)
tca
Theobroma cacao (10 genes)
vca
Volvox carteri (1 gene)
vvi
Vitis vinifera (17 genes)
zma
Zea mays (15 genes)



The gene family HOM000358 has 252 genes in 24 species (14 outlier genes).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
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Index of genes with 1 constraints:

Page 1 of 13, showing 20 records out of 252 total, starting on record 1, ending on 20

gene_id species description comment strand chr outlier
AL0G04240 aly name=fgenesh1_pg.C_scaffold_92000007;pid=359293;prot=eq;tid=359293 - scaffold_92 No
AL1G43270 aly name=scaffold_104584.1;pid=891790;prot=eq;tid=923303 - scaffold_1 Yes
AL1G43280 aly name=scaffold_104585.1;pid=891791;prot=eq;tid=923304 - scaffold_1 No
AL3G09490 aly name=scaffold_301058.1;pid=897088;prot=eq;tid=928601 - scaffold_3 Yes
AL3G09500 aly name=Al_scaffold_0003_929;pid=872288;prot=eq;tid=903801 - scaffold_3 No
AL4G25550 aly name=Al_scaffold_0004_2488;pid=870325;prot=eq;tid=901838 - scaffold_4 No
AL4G28140 aly name=scaffold_402926.1;pid=903425;prot=eq;tid=934938 - scaffold_4 No
AL5G08450 aly name=fgenesh1_pg.C_scaffold_5000662;pid=347270;prot=eq;tid=347270 - scaffold_5 No
AL5G24910 aly name=fgenesh1_pm.C_scaffold_5001558;pid=324014;prot=eq;tid=324014 - scaffold_5 No
AL6G01310 aly name=fgenesh2_kg.6__128__AT5G02170.1;pid=486994;prot=eq;tid=486994 + scaffold_6 No
AL6G01320 aly name=fgenesh2_kg.6__129__AT5G02180.1;pid=486995;prot=eq;tid=486995 + scaffold_6 No
AL6G15070 aly name=fgenesh2_kg.6__1505__AT5G15240.1;pid=488371;prot=eq;tid=488371 + scaffold_6 No
AL6G16600 aly name=fgenesh1_pm.C_scaffold_6001332;pid=326112;prot=eq;tid=326112 - scaffold_6 No
AT2G39130 ath Transmembrane amino acid transporter family protein; FUNCTIONS IN: amino acid transmembrane transporter activity; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Amino acid transporter, transmembrane (InterPro:IPR013057); BEST Arabidopsis thaliana protein match is: Transmembrane amino acid transporter family protein (TAIR:AT3G54830.1); Has 5002 Blast hits to 4966 proteins in 291 species: Archae - 22; Bacteria - 61; Metazoa - 1689; Fungi - 998; Plants - 1489; Viruses - 3; Other Eukaryotes - 740 (source: NCBI BLink).;Transmembrane amino acid transporter family protein transcript=eq;prot=eq; - 2 No
AT2G41190 ath Transmembrane amino acid transporter family protein; FUNCTIONS IN: amino acid transmembrane transporter activity; INVOLVED IN: amino acid transport; LOCATED IN: plasma membrane, membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Amino acid transporter, transmembrane (InterPro:IPR013057); BEST Arabidopsis thaliana protein match is: Transmembrane amino acid transporter family protein (TAIR:AT2G39130.1); Has 4993 Blast hits to 4959 proteins in 300 species: Archae - 18; Bacteria - 67; Metazoa - 1755; Fungi - 792; Plants - 1459; Viruses - 9; Other Eukaryotes - 893 (source: NCBI BLink).;Transmembrane amino acid transporter family protein transcript=eq;prot=eq; - 2 No
AT3G09330 ath Transmembrane amino acid transporter family protein; CONTAINS InterPro DOMAIN/s: Amino acid transporter, transmembrane (InterPro:IPR013057); BEST Arabidopsis thaliana protein match is: Transmembrane amino acid transporter family protein (TAIR:AT3G09340.1); Has 5089 Blast hits to 5044 proteins in 316 species: Archae - 6; Bacteria - 118; Metazoa - 1819; Fungi - 983; Plants - 1434; Viruses - 7; Other Eukaryotes - 722 (source: NCBI BLink).;Transmembrane amino acid transporter family protein transcript=eq;prot=eq; - 3 No
AT3G09340 ath Transmembrane amino acid transporter family protein; CONTAINS InterPro DOMAIN/s: Amino acid transporter, transmembrane (InterPro:IPR013057); BEST Arabidopsis thaliana protein match is: Transmembrane amino acid transporter family protein (TAIR:AT3G09330.1); Has 5037 Blast hits to 4989 proteins in 303 species: Archae - 8; Bacteria - 84; Metazoa - 1819; Fungi - 980; Plants - 1422; Viruses - 9; Other Eukaryotes - 715 (source: NCBI BLink).;Transmembrane amino acid transporter family protein transcript=eq;prot=eq; - 3 No
AT3G28960 ath Transmembrane amino acid transporter family protein; FUNCTIONS IN: amino acid transmembrane transporter activity; INVOLVED IN: amino acid transport; LOCATED IN: plasma membrane, membrane; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Amino acid transporter, transmembrane (InterPro:IPR013057); BEST Arabidopsis thaliana protein match is: Transmembrane amino acid transporter family protein (TAIR:AT5G15240.1); Has 4682 Blast hits to 4618 proteins in 292 species: Archae - 14; Bacteria - 67; Metazoa - 1733; Fungi - 899; Plants - 1284; Viruses - 8; Other Eukaryotes - 677 (source: NCBI BLink).;Transmembrane amino acid transporter family protein transcript=eq;prot=eq; - 3 No
AT3G54830 ath Transmembrane amino acid transporter family protein; CONTAINS InterPro DOMAIN/s: Amino acid transporter, transmembrane (InterPro:IPR013057); BEST Arabidopsis thaliana protein match is: Transmembrane amino acid transporter family protein (TAIR:AT2G39130.1); Has 4642 Blast hits to 4638 proteins in 371 species: Archae - 12; Bacteria - 272; Metazoa - 1629; Fungi - 958; Plants - 1130; Viruses - 3; Other Eukaryotes - 638 (source: NCBI BLink).;Transmembrane amino acid transporter family protein transcript=eq;prot=eq; - 3 No
AT5G02170 ath Transmembrane amino acid transporter family protein; CONTAINS InterPro DOMAIN/s: Amino acid transporter, transmembrane (InterPro:IPR013057); BEST Arabidopsis thaliana protein match is: Transmembrane amino acid transporter family protein (TAIR:AT5G02180.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).;Transmembrane amino acid transporter family protein transcript=eq;prot=eq; + 5 No
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