Gene family  

Sub-families
ORTHO000305 (70 genes in 25 species)
ORTHO007864 (22 genes in 20 species)
ORTHO008204 (22 genes in 19 species)
View all sub-families (13)
 
Keywords


Overview of gene family content




aly
Arabidopsis lyrata (9 genes)
ath
Arabidopsis thaliana (9 genes)
bdi
Brachypodium distachyon (5 genes)
cpa
Carica papaya (9 genes)
cre
Chlamydomonas reinhardtii (5 genes)
fve
Fragaria vesca (13 genes)
gma
Glycine max (19 genes)
lja
Lotus japonicus (8 genes)
mdo
Malus domestica (35 genes)
mes
Manihot esculenta (13 genes)
mrcc299
Micromonas sp. RCC299 (5 genes)
mtr
Medicago truncatula (11 genes)
olu
Ostreococcus lucimarinus (4 genes)
osa
Oryza sativa ssp. japonica (7 genes)
osaindica
Oryza sativa ssp. indica (8 genes)
ota
Ostreococcus tauri (3 genes)
ppa
Physcomitrella patens (11 genes)
ptr
Populus trichocarpa (14 genes)
rco
Ricinus communis (12 genes)
sbi
Sorghum bicolor (8 genes)
smo
Selaginella moellendorffii (8 genes)
tca
Theobroma cacao (13 genes)
vca
Volvox carteri (4 genes)
vvi
Vitis vinifera (11 genes)
zma
Zea mays (10 genes)



The gene family HOM000352 has 254 genes in 25 species (38 outlier genes).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
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Index of genes with 1 constraints:

Page 1 of 13, showing 20 records out of 254 total, starting on record 1, ending on 20

gene_id species description comment strand chr outlier
AL1G15370 aly name=scaffold_101633.1;pid=888839;prot=eq;tid=920352 + scaffold_1 No
AL3G08640 aly name=fgenesh2_kg.3__858__AT3G08580.2;pid=478157;prot=eq;tid=478157 - scaffold_3 No
AL3G41540 aly name=Al_scaffold_0003_4008;pid=875367;prot=eq;tid=906880 + scaffold_3 Yes
AL5G21550 aly name=scaffold_502245.1;pid=906541;prot=eq;tid=938054 + scaffold_5 No
AL6G13220 aly name=fgenesh2_kg.6__1303__AT5G13490.1;pid=488169;prot=eq;tid=488169 + scaffold_6 No
AL6G17270 aly name=fgenesh2_kg.6__1739__AT5G17400.1;pid=488605;prot=eq;tid=488605 - scaffold_6 No
AL7G13450 aly name=fgenesh2_kg.7__1367__AT4G28390.1;pid=491934;prot=eq;tid=491934 + scaffold_7 No
AL7G15870 aly name=fgenesh2_kg.7__1627__AT4G26180.1;pid=492194;prot=eq;tid=492194 + scaffold_7 No
AL8G22000 aly name=fgenesh2_kg.8__1550__AT5G56450.1;pid=495734;prot=eq;tid=495734 - scaffold_8 No
AT1G14560 ath Mitochondrial substrate carrier family protein; FUNCTIONS IN: binding, transporter activity; INVOLVED IN: transport, mitochondrial transport, transmembrane transport; LOCATED IN: endomembrane system, mitochondrial inner membrane, membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Mitochondrial carrier protein (InterPro:IPR002067), Mitochondrial substrate carrier (InterPro:IPR001993), Mitochondrial substrate/solute carrier (InterPro:IPR018108), Graves disease carrier protein (InterPro:IPR002167); BEST Arabidopsis thaliana protein match is: Mitochondrial substrate carrier family protein (TAIR:AT4G26180.1); Has 25798 Blast hits to 13799 proteins in 460 species: Archae - 0; Bacteria - 2; Metazoa - 10868; Fungi - 7493; Plants - 4688; Viruses - 0; Other Eukaryotes - 2747 (source: NCBI BLink).;Mitochondrial substrate carrier family protein transcript=eq;prot=eq; + 1 No
AT2G20635 ath ATP binding;protein kinases;protein serine/threonine kinases; FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Mitotic checkpoint serine/threonine protein kinase, Bub1 (InterPro:IPR015661), Protein kinase, catalytic domain (InterPro:IPR000719), Serine/threonine-protein kinase domain (InterPro:IPR002290), Mad3/BUB1 homology region 1 (InterPro:IPR013212), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Serine/threonine-protein kinase, active site (InterPro:IPR008271), Protein kinase-like domain (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: BUB1-related (BUB1: budding uninhibited by benzymidazol 1) (TAIR:AT2G33560.1); Has 7386 Blast hits to 7115 proteins in 591 species: Archae - 30; Bacteria - 832; Metazoa - 2305; Fungi - 1186; Plants - 1328; Viruses - 3; Other Eukaryotes - 1702 (source: NCBI BLink).;ATP binding;protein kinases;protein serine/threonine kinases transcript=eq;prot=eq; + 2 Yes
AT3G08580 ath mitochondrial ADP/ATP carrier;ADP/ATP carrier 1 transcript=eq;prot=eq; - 3 No
AT3G51870 ath Mitochondrial substrate carrier family protein; FUNCTIONS IN: binding, transporter activity; INVOLVED IN: transport, response to nematode; LOCATED IN: mitochondrial inner membrane, chloroplast, chloroplast envelope; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Mitochondrial carrier protein (InterPro:IPR002067), Mitochondrial substrate carrier (InterPro:IPR001993), Mitochondrial substrate/solute carrier (InterPro:IPR018108); BEST Arabidopsis thaliana protein match is: thylakoid ATP/ADP carrier (TAIR:AT5G01500.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).;Mitochondrial substrate carrier family protein transcript=eq;prot=eq; + 3 No
AT4G26180 ath Mitochondrial substrate carrier family protein; FUNCTIONS IN: binding, transporter activity; INVOLVED IN: transport, mitochondrial transport, transmembrane transport; LOCATED IN: mitochondrial inner membrane, membrane; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: M germinated pollen stage, 4 anthesis, petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: Mitochondrial carrier protein (InterPro:IPR002067), Mitochondrial substrate carrier (InterPro:IPR001993), Mitochondrial substrate/solute carrier (InterPro:IPR018108), Adenine nucleotide translocator 1 (InterPro:IPR002113); BEST Arabidopsis thaliana protein match is: Mitochondrial substrate carrier family protein (TAIR:AT1G14560.1); Has 27152 Blast hits to 14144 proteins in 467 species: Archae - 0; Bacteria - 0; Metazoa - 12042; Fungi - 7753; Plants - 4485; Viruses - 3; Other Eukaryotes - 2869 (source: NCBI BLink).;Mitochondrial substrate carrier family protein transcript=eq;prot=eq; - 4 No
AT4G28390 ath Encodes a mitochondrial ADP/ATP carrier protein. Shown in heterologous systems to be located in the plasma membrane. Has comparable affinity for ADP and ATP (in E.coli).;ADP/ATP carrier 3 transcript=eq;prot=eq; - 4 No
AT5G13490 ath Encodes mitochondrial ADP/ATP carrier;ADP/ATP carrier 2 transcript=eq;prot=eq; + 5 No
AT5G17400 ath This gene is predicted to encode an ER-localized adenine nucleotide transporter with six putative transmembrane helices. It appears to act as a ATP:ADP antiporter when expressed in E.coli plasma membranes. Transcript levels for several ER-localized chaperones (e.g. BIP1/2) and other ATP-requiring ER proteins (e.g. CPK2) are reduced in er-ant1 knock-out lines, suggesting a lack of adequate ATP transport into the ER in these mutants. They also have reduced seed oil and seed protein levels.;endoplasmic reticulum-adenine nucleotide transporter 1 transcript=eq;prot=eq; - 5 No
AT5G56450 ath Mitochondrial substrate carrier family protein; FUNCTIONS IN: binding, transporter activity; INVOLVED IN: transport, mitochondrial transport, transmembrane transport; LOCATED IN: mitochondrial inner membrane, membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Mitochondrial carrier protein (InterPro:IPR002067), Mitochondrial substrate carrier (InterPro:IPR001993), Mitochondrial substrate/solute carrier (InterPro:IPR018108), Adenine nucleotide translocator 1 (InterPro:IPR002113); BEST Arabidopsis thaliana protein match is: ADP/ATP carrier 1 (TAIR:AT3G08580.2); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).;Mitochondrial substrate carrier family protein transcript=eq;prot=eq; - 5 No
BD1G26580 bdi CAMK_KIN1/SNF1/Nim1_like.7 - CAMK includes calcium/calmodulin depedent protein kinases, expressed, subfamily KIN1/SNF1/Nim1_like(CAMK_2) pid=Bradi1g26580.1;tid=Bradi1g26580.1;GeneName=Bradi1g26580;transcript=eq;prot=eq - Bd1 Yes
BD1G29260 bdi adenine transmembrane transporter activity, ATP:ADP antiporter activity, adenine nucleotide transmembrane transporter activity (Blast2GO) pid=Bradi1g29260.1;tid=Bradi1g29260.1;GeneName=Bradi1g29260;transcript=eq;prot=eq + Bd1 No
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