Gene family  

Sub-families
ORTHO001134 (41 genes in 17 species)
ORTHO001140 (41 genes in 18 species)
ORTHO001304 (39 genes in 19 species)
View all sub-families (21)
 
Keywords


Overview of gene family content




aly
Arabidopsis lyrata (11 genes)
ath
Arabidopsis thaliana (11 genes)
bdi
Brachypodium distachyon (16 genes)
cpa
Carica papaya (9 genes)
fve
Fragaria vesca (10 genes)
gma
Glycine max (25 genes)
lja
Lotus japonicus (12 genes)
mdo
Malus domestica (15 genes)
mes
Manihot esculenta (15 genes)
mtr
Medicago truncatula (9 genes)
olu
Ostreococcus lucimarinus (1 gene)
osa
Oryza sativa ssp. japonica (15 genes)
osaindica
Oryza sativa ssp. indica (18 genes)
ppa
Physcomitrella patens (7 genes)
ptr
Populus trichocarpa (11 genes)
rco
Ricinus communis (11 genes)
sbi
Sorghum bicolor (17 genes)
smo
Selaginella moellendorffii (5 genes)
tca
Theobroma cacao (8 genes)
vvi
Vitis vinifera (10 genes)
zma
Zea mays (18 genes)



The gene family HOM000351 has 254 genes in 21 species (6 outlier genes).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
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Index of genes with 1 constraints:

Page 1 of 13, showing 20 records out of 254 total, starting on record 1, ending on 20

gene_id species description comment strand chr outlier
AL0G00430 aly name=fgenesh1_pm.C_scaffold_9000022;pid=332994;prot=eq;tid=332994 + scaffold_9 No
AL1G03520 aly name=fgenesh1_pm.C_scaffold_1000285;pid=311505;prot=eq;tid=311505 + scaffold_1 No
AL1G04020 aly name=fgenesh2_kg.1__398__AT1G04610.1;pid=470444;prot=eq;tid=470444 + scaffold_1 No
AL1G22630 aly name=fgenesh1_pm.C_scaffold_1001815;pid=313035;prot=eq;tid=313035 + scaffold_1 No
AL1G42710 aly name=fgenesh1_pm.C_scaffold_1003100;pid=314320;prot=eq;tid=314320 + scaffold_1 No
AL4G18430 aly name=Al_scaffold_0004_1791;pid=869628;prot=eq;tid=901141 - scaffold_4 No
AL6G11120 aly name=fgenesh2_kg.6__1097__AT5G11320.1;pid=487963;prot=eq;tid=487963 - scaffold_6 No
AL6G25900 aly name=scaffold_602684.1;pid=910627;prot=eq;tid=942140 - scaffold_6 No
AL7G08870 aly name=fgenesh1_pg.C_scaffold_7000746;pid=353573;prot=eq;tid=353573 - scaffold_7 No
AL7G13040 aly name=fgenesh2_kg.7__1318__AT4G28720.1;pid=491885;prot=eq;tid=491885 - scaffold_7 No
AL8G06110 aly name=fgenesh2_kg.8__432__AT5G43890.1;pid=494616;prot=eq;tid=494616 + scaffold_8 No
AT1G04180 ath YUCCA 9 (YUC9); FUNCTIONS IN: NADP or NADPH binding, oxidoreductase activity, monooxygenase activity, FAD binding, flavin-containing monooxygenase activity; INVOLVED IN: oxidation reduction; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: Pyridine nucleotide-disulphide oxidoreductase, class-II (InterPro:IPR000103), FAD-dependent pyridine nucleotide-disulphide oxidoreductase (InterPro:IPR013027), Flavin-containing monooxygenase-like (InterPro:IPR020946); BEST Arabidopsis thaliana protein match is: Flavin-binding monooxygenase family protein (TAIR:AT5G43890.1); Has 11871 Blast hits to 11852 proteins in 1762 species: Archae - 17; Bacteria - 7034; Metazoa - 796; Fungi - 1508; Plants - 659; Viruses - 0; Other Eukaryotes - 1857 (source: NCBI BLink).;YUCCA 9 transcript=eq;prot=eq; + 1 No
AT1G04610 ath YUCCA 3 (YUC3); FUNCTIONS IN: NADP or NADPH binding, oxidoreductase activity, FAD binding, flavin-containing monooxygenase activity; INVOLVED IN: auxin biosynthetic process; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: 4 anthesis, C globular stage, petal differentiation and expansion stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: Pyridine nucleotide-disulphide oxidoreductase, class-II (InterPro:IPR000103), FAD-dependent pyridine nucleotide-disulphide oxidoreductase (InterPro:IPR013027), Flavin-containing monooxygenase-like (InterPro:IPR020946); BEST Arabidopsis thaliana protein match is: YUCCA 7 (TAIR:AT2G33230.1); Has 9657 Blast hits to 9637 proteins in 1196 species: Archae - 33; Bacteria - 4899; Metazoa - 784; Fungi - 1494; Plants - 670; Viruses - 0; Other Eukaryotes - 1777 (source: NCBI BLink).;YUCCA 3 transcript=eq;prot=eq; + 1 No
AT1G21430 ath YUC11; FUNCTIONS IN: NADP or NADPH binding, oxidoreductase activity, monooxygenase activity, FAD binding, flavin-containing monooxygenase activity; INVOLVED IN: regulation of anatomical structure morphogenesis; LOCATED IN: membrane; EXPRESSED IN: leaf; CONTAINS InterPro DOMAIN/s: Pyridine nucleotide-disulphide oxidoreductase, class-II (InterPro:IPR000103), FAD-dependent pyridine nucleotide-disulphide oxidoreductase (InterPro:IPR013027), Flavin-containing monooxygenase-like (InterPro:IPR020946); BEST Arabidopsis thaliana protein match is: Flavin-containing monooxygenase family protein (TAIR:AT1G48910.1); Has 9762 Blast hits to 9749 proteins in 1331 species: Archae - 35; Bacteria - 5524; Metazoa - 772; Fungi - 1287; Plants - 602; Viruses - 0; Other Eukaryotes - 1542 (source: NCBI BLink).;Flavin-binding monooxygenase family protein transcript=eq;prot=eq; + 1 No
AT1G48910 ath YUC10; FUNCTIONS IN: NADP or NADPH binding, oxidoreductase activity, monooxygenase activity, FAD binding, flavin-containing monooxygenase activity; INVOLVED IN: regulation of anatomical structure morphogenesis; LOCATED IN: cellular_component unknown; EXPRESSED IN: sperm cell; CONTAINS InterPro DOMAIN/s: Pyridine nucleotide-disulphide oxidoreductase, class-II (InterPro:IPR000103), FAD-dependent pyridine nucleotide-disulphide oxidoreductase (InterPro:IPR013027), Flavin-containing monooxygenase-like (InterPro:IPR020946); BEST Arabidopsis thaliana protein match is: Flavin-binding monooxygenase family protein (TAIR:AT1G21430.1); Has 10747 Blast hits to 10734 proteins in 1402 species: Archae - 41; Bacteria - 5770; Metazoa - 759; Fungi - 1564; Plants - 638; Viruses - 0; Other Eukaryotes - 1975 (source: NCBI BLink).;Flavin-containing monooxygenase family protein transcript=eq;prot=eq; + 1 No
AT2G33230 ath YUCCA 7 (YUC7); FUNCTIONS IN: NADP or NADPH binding, oxidoreductase activity, monooxygenase activity, FAD binding, flavin-containing monooxygenase activity; INVOLVED IN: oxidation reduction; CONTAINS InterPro DOMAIN/s: Pyridine nucleotide-disulphide oxidoreductase, class-II (InterPro:IPR000103), FAD-dependent pyridine nucleotide-disulphide oxidoreductase (InterPro:IPR013027), Flavin-containing monooxygenase-like (InterPro:IPR020946); BEST Arabidopsis thaliana protein match is: YUCCA 3 (TAIR:AT1G04610.1); Has 9342 Blast hits to 9320 proteins in 1117 species: Archae - 14; Bacteria - 4686; Metazoa - 781; Fungi - 1476; Plants - 662; Viruses - 0; Other Eukaryotes - 1723 (source: NCBI BLink).;YUCCA 7 transcript=eq;prot=eq; - 2 No
AT4G13260 ath YUCCA2 (YUC2); FUNCTIONS IN: NADP or NADPH binding, oxidoreductase activity, FAD binding, flavin-containing monooxygenase activity; INVOLVED IN: auxin biosynthetic process; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pyridine nucleotide-disulphide oxidoreductase, class-II (InterPro:IPR000103), FAD-dependent pyridine nucleotide-disulphide oxidoreductase (InterPro:IPR013027), Flavin-containing monooxygenase-like (InterPro:IPR020946); BEST Arabidopsis thaliana protein match is: Flavin-binding monooxygenase family protein (TAIR:AT5G25620.2); Has 8906 Blast hits to 8890 proteins in 1145 species: Archae - 19; Bacteria - 4493; Metazoa - 721; Fungi - 1451; Plants - 645; Viruses - 0; Other Eukaryotes - 1577 (source: NCBI BLink).;Flavin-binding monooxygenase family protein transcript=eq;prot=eq; - 4 No
AT4G28720 ath Auxin biosynthetic gene regulated by RVE1. Overexpression leads to suppression of bri1 phenotype.;Flavin-binding monooxygenase family protein transcript=eq;prot=eq; + 4 No
AT4G32540 ath Mutant has elevated levels of free IAA in dominant mutant allele; Flavin Monooxygenase-Like Enzyme; Auxin Biosynthesis;Flavin-binding monooxygenase family protein transcript=eq;prot=eq; + 4 No
AT5G11320 ath Belongs to the YUC gene family. Encodes a predicted flavin monooxygenase YUC4 involved in auxin biosynthesis and plant development.;Flavin-binding monooxygenase family protein transcript=eq;prot=eq; - 5 No
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