Gene family  

Sub-families
ORTHO004598 (27 genes in 18 species)
ORTHO004872 (26 genes in 18 species)
ORTHO008292 (22 genes in 10 species)
View all sub-families (24)
 
Keywords


Overview of gene family content




aly
Arabidopsis lyrata (10 genes)
ath
Arabidopsis thaliana (8 genes)
bdi
Brachypodium distachyon (8 genes)
cpa
Carica papaya (6 genes)
cre
Chlamydomonas reinhardtii (1 gene)
fve
Fragaria vesca (11 genes)
gma
Glycine max (23 genes)
lja
Lotus japonicus (15 genes)
mdo
Malus domestica (30 genes)
mes
Manihot esculenta (20 genes)
mtr
Medicago truncatula (14 genes)
osa
Oryza sativa ssp. japonica (15 genes)
osaindica
Oryza sativa ssp. indica (14 genes)
ptr
Populus trichocarpa (22 genes)
rco
Ricinus communis (10 genes)
sbi
Sorghum bicolor (7 genes)
smo
Selaginella moellendorffii (7 genes)
tca
Theobroma cacao (10 genes)
vvi
Vitis vinifera (21 genes)
zma
Zea mays (7 genes)



The gene family HOM000346 has 259 genes in 20 species (11 outlier genes).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
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Index of genes with 1 constraints:

Page 1 of 13, showing 20 records out of 259 total, starting on record 1, ending on 20

gene_id species description comment strand chr outlier
AL1G20580 aly name=fgenesh2_kg.1__2134__AT1G19540.1;pid=472180;prot=eq;tid=472180 + scaffold_1 No
AL1G33290 aly name=fgenesh2_kg.1__3347__AT1G32100.1;pid=473393;prot=eq;tid=473393 - scaffold_1 No
AL2G24140 aly name=scaffold_202468.1;pid=895394;prot=eq;tid=926907 + scaffold_2 No
AL2G24160 aly name=fgenesh2_kg.2__1801__AT1G75280.1;pid=476671;prot=eq;tid=476671 + scaffold_2 No
AL2G24170 aly name=fgenesh2_kg.2__1802__AT1G75290.1;pid=476672;prot=eq;tid=476672 + scaffold_2 No
AL2G24180 aly name=fgenesh1_pm.C_scaffold_2001494;pid=316461;prot=eq;tid=316461 + scaffold_2 No
AL5G06270 aly name=Al_scaffold_0005_593;pid=865114;prot=eq;tid=896627 - scaffold_5 No
AL7G01160 aly name=fgenesh2_kg.7__128__AT4G39230.1;pid=490695;prot=eq;tid=490695 - scaffold_7 No
AL7G06400 aly name=scaffold_700675.1;pid=912933;prot=eq;tid=944446 - scaffold_7 No
AL7G30990 aly name=Al_scaffold_0007_2988;pid=859489;prot=eq;tid=891002 - scaffold_7 No
AT1G19540 ath NmrA-like negative transcriptional regulator family protein; FUNCTIONS IN: binding, catalytic activity; INVOLVED IN: metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: NAD(P)-binding domain (InterPro:IPR016040), NmrA-like (InterPro:IPR008030); BEST Arabidopsis thaliana protein match is: NmrA-like negative transcriptional regulator family protein (TAIR:AT1G75280.1); Has 2081 Blast hits to 2077 proteins in 492 species: Archae - 4; Bacteria - 817; Metazoa - 4; Fungi - 543; Plants - 557; Viruses - 7; Other Eukaryotes - 149 (source: NCBI BLink).;NmrA-like negative transcriptional regulator family protein transcript=eq;prot=eq; + 1 No
AT1G32100 ath Encodes a pinoresinol reductase involved in lignan biosynthesis. Expressed strongly in roots and less strongly in stems. Shows specificity for pinoresinol and not lariciresinol.;pinoresinol reductase 1 transcript=eq;prot=eq; - 1 No
AT1G75280 ath isoflavone reductase, putative, identical to SP:P52577 Isoflavone reductase homolog P3 (EC 1.3.1.-) {Arabidopsis thaliana}; contains Pfam profile PF02716: isoflavone reductase. Involved in response to oxidative stress.;NmrA-like negative transcriptional regulator family protein transcript=eq;prot=eq; + 1 No
AT1G75290 ath encodes a protein whose sequence is similar to an isoflavone reductase;NAD(P)-binding Rossmann-fold superfamily protein transcript=eq;prot=eq; + 1 No
AT1G75300 ath encodes a protein whose sequence is similar to an isoflavone reductase;NmrA-like negative transcriptional regulator family protein transcript=eq;prot=eq; + 1 No
AT4G13660 ath Encodes a pinoresinol reductase involved in lignan biosynthesis. Expressed strongly in roots and less strongly in stems. Shows preference for pinoresinol and not lariciresinol.;pinoresinol reductase 2 transcript=eq;prot=eq; + 4 No
AT4G34540 ath encodes a protein whose sequence is similar to pinoresinol-lariciresinol reductase from pine.;NmrA-like negative transcriptional regulator family protein transcript=eq;prot=eq; + 4 No
AT4G39230 ath encodes a protein whose sequence is similar to phenylcoumaran benzylic ether reductase (PCBER), which catalyzes NADPH-dependent reduction of 8-5' linked lignans such as dehydrodiconiferyl alcohol to give isodihydrodehydrodiconiferyl alcohol.;NmrA-like negative transcriptional regulator family protein transcript=eq;prot=eq; - 4 No
BD1G67560 bdi pid=Bradi1g67560.1;tid=Bradi1g67560.1;GeneName=Bradi1g67560;transcript=eq;prot=eq + Bd1 No
BD2G08230 bdi pid=Bradi2g08230.1;tid=Bradi2g08230.1;GeneName=Bradi2g08230;transcript=eq;prot=eq + Bd2 No
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