Gene family  

Sub-families
ORTHO007133 (23 genes in 17 species)
ORTHO007821 (22 genes in 19 species)
ORTHO008920 (21 genes in 19 species)
View all sub-families (21)
 
Keywords


Overview of gene family content




aly
Arabidopsis lyrata (10 genes)
ath
Arabidopsis thaliana (10 genes)
bdi
Brachypodium distachyon (9 genes)
cpa
Carica papaya (8 genes)
fve
Fragaria vesca (30 genes)
gma
Glycine max (20 genes)
lja
Lotus japonicus (9 genes)
mdo
Malus domestica (25 genes)
mes
Manihot esculenta (14 genes)
mrcc299
Micromonas sp. RCC299 (1 gene)
mtr
Medicago truncatula (10 genes)
olu
Ostreococcus lucimarinus (1 gene)
osa
Oryza sativa ssp. japonica (12 genes)
osaindica
Oryza sativa ssp. indica (13 genes)
ppa
Physcomitrella patens (5 genes)
ptr
Populus trichocarpa (18 genes)
rco
Ricinus communis (14 genes)
sbi
Sorghum bicolor (8 genes)
smo
Selaginella moellendorffii (8 genes)
tca
Theobroma cacao (10 genes)
vvi
Vitis vinifera (12 genes)
zma
Zea mays (13 genes)



The gene family HOM000342 has 260 genes in 22 species (19 outlier genes).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
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Index of genes with 1 constraints:

Page 1 of 13, showing 20 records out of 260 total, starting on record 1, ending on 20

gene_id species description comment strand chr outlier
AL1G08490 aly name=fgenesh2_kg.1__912__AT1G08845.1;pid=470958;prot=eq;tid=470958 + scaffold_1 No
AL1G33010 aly name=scaffold_103530.1;pid=890736;prot=eq;tid=922249 - scaffold_1 No
AL3G22040 aly name=scaffold_302403.1;pid=898433;prot=eq;tid=929946 - scaffold_3 No
AL3G24810 aly name=fgenesh2_kg.3__2463__AT3G22440.1;pid=479762;prot=eq;tid=479762 + scaffold_3 No
AL3G24820 aly name=fgenesh2_kg.3__2464__AT3G22450.1;pid=479763;prot=eq;tid=479763 + scaffold_3 No
AL3G33690 aly name=scaffold_303589.1;pid=899619;prot=eq;tid=931132 + scaffold_3 Yes
AL6G16190 aly name=fgenesh2_kg.6__1619__AT5G16320.1;pid=488485;prot=eq;tid=488485 + scaffold_6 No
AL6G28110 aly name=scaffold_602925.1;pid=910868;prot=eq;tid=942381 - scaffold_6 No
AL7G29090 aly name=scaffold_703084.1;pid=915342;prot=eq;tid=946855 + scaffold_7 No
AL8G11190 aly name=fgenesh1_pm.C_scaffold_8000591;pid=331248;prot=eq;tid=331248 + scaffold_8 No
AT1G08845 ath Ribosomal L18p/L5e family protein; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: endomembrane system, ribosome, intracellular; CONTAINS InterPro DOMAIN/s: Ribosomal protein L18/L5 (InterPro:IPR005484); BEST Arabidopsis thaliana protein match is: Ribosomal L18p/L5e family protein (TAIR:AT3G20230.1); Has 251 Blast hits to 251 proteins in 55 species: Archae - 0; Bacteria - 86; Metazoa - 0; Fungi - 0; Plants - 148; Viruses - 0; Other Eukaryotes - 17 (source: NCBI BLink).;Ribosomal L18p/L5e family protein transcript=eq;prot=eq; + 1 No
AT1G31814 ath family member of FRI-related genes that is required for the winter-annual habit. Genbank accession BK004885;FRIGIDA like 2 transcript=eq;prot=eq; - 1 No
AT3G20230 ath Ribosomal L18p/L5e family protein; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: ribosome, intracellular, chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L18/L5 (InterPro:IPR005484); BEST Arabidopsis thaliana protein match is: Ribosomal L18p/L5e family protein (TAIR:AT1G08845.2); Has 1330 Blast hits to 1330 proteins in 478 species: Archae - 0; Bacteria - 978; Metazoa - 36; Fungi - 0; Plants - 142; Viruses - 0; Other Eukaryotes - 174 (source: NCBI BLink).;Ribosomal L18p/L5e family protein transcript=eq;prot=eq; - 3 No
AT3G22440 ath FRIGIDA-like protein; CONTAINS InterPro DOMAIN/s: Frigida-like (InterPro:IPR012474); BEST Arabidopsis thaliana protein match is: FRIGIDA-like protein (TAIR:AT4G14900.1); Has 1385 Blast hits to 1327 proteins in 123 species: Archae - 0; Bacteria - 9; Metazoa - 139; Fungi - 70; Plants - 1142; Viruses - 0; Other Eukaryotes - 25 (source: NCBI BLink).;FRIGIDA-like protein transcript=eq;prot=eq; + 3 No
AT3G22450 ath Ribosomal L18p/L5e family protein; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: mitochondrion, ribosome, intracellular; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L18/L5 (InterPro:IPR005484); BEST Arabidopsis thaliana protein match is: Ribosomal L18p/L5e family protein (TAIR:AT1G08845.1); Has 315 Blast hits to 315 proteins in 79 species: Archae - 0; Bacteria - 79; Metazoa - 42; Fungi - 0; Plants - 149; Viruses - 0; Other Eukaryotes - 45 (source: NCBI BLink).;Ribosomal L18p/L5e family protein transcript=eq;prot=eq; + 3 No
AT4G14900 ath FRIGIDA-like protein; CONTAINS InterPro DOMAIN/s: Frigida-like (InterPro:IPR012474); BEST Arabidopsis thaliana protein match is: FRIGIDA-like protein (TAIR:AT3G22440.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).;FRIGIDA-like protein transcript=eq;prot=eq; - 4 No
AT5G16320 ath family member of FRI-related genes that is required for the winter-annual habit. Genbank accession BK004884;FRIGIDA like 1 transcript=eq;prot=eq; + 5 No
AT5G27230 ath Frigida-like protein; CONTAINS InterPro DOMAIN/s: Frigida-like (InterPro:IPR012474); BEST Arabidopsis thaliana protein match is: FRIGIDA-like protein (TAIR:AT5G48385.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).;Frigida-like protein transcript=eq;prot=eq; + 5 No
AT5G48385 ath FRIGIDA-like protein; CONTAINS InterPro DOMAIN/s: Frigida-like (InterPro:IPR012474); BEST Arabidopsis thaliana protein match is: FRIGIDA-like protein (TAIR:AT4G14900.1); Has 1269 Blast hits to 1187 proteins in 101 species: Archae - 0; Bacteria - 22; Metazoa - 72; Fungi - 9; Plants - 1133; Viruses - 0; Other Eukaryotes - 33 (source: NCBI BLink).;FRIGIDA-like protein transcript=eq;prot=eq; + 5 No
AT5G48390 ath Defective in meiotic chromosome segregation. It is involved in crossover formation and involved in both male and female meiosis.;Tetratricopeptide repeat (TPR)-like superfamily protein transcript=eq;prot=eq; + 5 No
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