Gene family 
- Id
- HOM000342
- Method
- BLASTP E_value=1e-05 MCL_I=2
- Sequences
- Sub-families
-
ORTHO007133 (23 genes in 17 species)
ORTHO007821 (22 genes in 19 species)
ORTHO008920 (21 genes in 19 species)
View all sub-families (21)
- Keywords
-
Overview of gene family content
- aly
- Arabidopsis lyrata (10 genes)
- ath
- Arabidopsis thaliana (10 genes)
- bdi
- Brachypodium distachyon (9 genes)
- cpa
- Carica papaya (8 genes)
- fve
- Fragaria vesca (30 genes)
- gma
- Glycine max (20 genes)
- lja
- Lotus japonicus (9 genes)
- mdo
- Malus domestica (25 genes)
- mes
- Manihot esculenta (14 genes)
- mrcc299
- Micromonas sp. RCC299 (1 gene)
- mtr
- Medicago truncatula (10 genes)
- olu
- Ostreococcus lucimarinus (1 gene)
- osa
- Oryza sativa ssp. japonica (12 genes)
- osaindica
- Oryza sativa ssp. indica (13 genes)
- ppa
- Physcomitrella patens (5 genes)
- ptr
- Populus trichocarpa (18 genes)
- rco
- Ricinus communis (14 genes)
- sbi
- Sorghum bicolor (8 genes)
- smo
- Selaginella moellendorffii (8 genes)
- tca
- Theobroma cacao (10 genes)
- vvi
- Vitis vinifera (12 genes)
- zma
- Zea mays (13 genes)
The gene family HOM000342 has 260 genes in 22 species (19 outlier genes).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
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Index of genes with 1 constraints:
- gene family : HOM000342
Page 1 of 13, showing 20 records out of 260 total, starting on record 1, ending on 20
| gene_id | species | description | comment | strand | chr | outlier |
|---|---|---|---|---|---|---|
| AL1G08490 | aly | name=fgenesh2_kg.1__912__AT1G08845.1;pid=470958;prot=eq;tid=470958 | + | scaffold_1 | No | |
| AL1G33010 | aly | name=scaffold_103530.1;pid=890736;prot=eq;tid=922249 | - | scaffold_1 | No | |
| AL3G22040 | aly | name=scaffold_302403.1;pid=898433;prot=eq;tid=929946 | - | scaffold_3 | No | |
| AL3G24810 | aly | name=fgenesh2_kg.3__2463__AT3G22440.1;pid=479762;prot=eq;tid=479762 | + | scaffold_3 | No | |
| AL3G24820 | aly | name=fgenesh2_kg.3__2464__AT3G22450.1;pid=479763;prot=eq;tid=479763 | + | scaffold_3 | No | |
| AL3G33690 | aly | name=scaffold_303589.1;pid=899619;prot=eq;tid=931132 | + | scaffold_3 | Yes | |
| AL6G16190 | aly | name=fgenesh2_kg.6__1619__AT5G16320.1;pid=488485;prot=eq;tid=488485 | + | scaffold_6 | No | |
| AL6G28110 | aly | name=scaffold_602925.1;pid=910868;prot=eq;tid=942381 | - | scaffold_6 | No | |
| AL7G29090 | aly | name=scaffold_703084.1;pid=915342;prot=eq;tid=946855 | + | scaffold_7 | No | |
| AL8G11190 | aly | name=fgenesh1_pm.C_scaffold_8000591;pid=331248;prot=eq;tid=331248 | + | scaffold_8 | No | |
| AT1G08845 | ath | Ribosomal L18p/L5e family protein; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: endomembrane system, ribosome, intracellular; CONTAINS InterPro DOMAIN/s: Ribosomal protein L18/L5 (InterPro:IPR005484); BEST Arabidopsis thaliana protein match is: Ribosomal L18p/L5e family protein (TAIR:AT3G20230.1); Has 251 Blast hits to 251 proteins in 55 species: Archae - 0; Bacteria - 86; Metazoa - 0; Fungi - 0; Plants - 148; Viruses - 0; Other Eukaryotes - 17 (source: NCBI BLink).;Ribosomal L18p/L5e family protein | transcript=eq;prot=eq; | + | 1 | No |
| AT1G31814 | ath | family member of FRI-related genes that is required for the winter-annual habit. Genbank accession BK004885;FRIGIDA like 2 | transcript=eq;prot=eq; | - | 1 | No |
| AT3G20230 | ath | Ribosomal L18p/L5e family protein; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: ribosome, intracellular, chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L18/L5 (InterPro:IPR005484); BEST Arabidopsis thaliana protein match is: Ribosomal L18p/L5e family protein (TAIR:AT1G08845.2); Has 1330 Blast hits to 1330 proteins in 478 species: Archae - 0; Bacteria - 978; Metazoa - 36; Fungi - 0; Plants - 142; Viruses - 0; Other Eukaryotes - 174 (source: NCBI BLink).;Ribosomal L18p/L5e family protein | transcript=eq;prot=eq; | - | 3 | No |
| AT3G22440 | ath | FRIGIDA-like protein; CONTAINS InterPro DOMAIN/s: Frigida-like (InterPro:IPR012474); BEST Arabidopsis thaliana protein match is: FRIGIDA-like protein (TAIR:AT4G14900.1); Has 1385 Blast hits to 1327 proteins in 123 species: Archae - 0; Bacteria - 9; Metazoa - 139; Fungi - 70; Plants - 1142; Viruses - 0; Other Eukaryotes - 25 (source: NCBI BLink).;FRIGIDA-like protein | transcript=eq;prot=eq; | + | 3 | No |
| AT3G22450 | ath | Ribosomal L18p/L5e family protein; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: mitochondrion, ribosome, intracellular; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L18/L5 (InterPro:IPR005484); BEST Arabidopsis thaliana protein match is: Ribosomal L18p/L5e family protein (TAIR:AT1G08845.1); Has 315 Blast hits to 315 proteins in 79 species: Archae - 0; Bacteria - 79; Metazoa - 42; Fungi - 0; Plants - 149; Viruses - 0; Other Eukaryotes - 45 (source: NCBI BLink).;Ribosomal L18p/L5e family protein | transcript=eq;prot=eq; | + | 3 | No |
| AT4G14900 | ath | FRIGIDA-like protein; CONTAINS InterPro DOMAIN/s: Frigida-like (InterPro:IPR012474); BEST Arabidopsis thaliana protein match is: FRIGIDA-like protein (TAIR:AT3G22440.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).;FRIGIDA-like protein | transcript=eq;prot=eq; | - | 4 | No |
| AT5G16320 | ath | family member of FRI-related genes that is required for the winter-annual habit. Genbank accession BK004884;FRIGIDA like 1 | transcript=eq;prot=eq; | + | 5 | No |
| AT5G27230 | ath | Frigida-like protein; CONTAINS InterPro DOMAIN/s: Frigida-like (InterPro:IPR012474); BEST Arabidopsis thaliana protein match is: FRIGIDA-like protein (TAIR:AT5G48385.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).;Frigida-like protein | transcript=eq;prot=eq; | + | 5 | No |
| AT5G48385 | ath | FRIGIDA-like protein; CONTAINS InterPro DOMAIN/s: Frigida-like (InterPro:IPR012474); BEST Arabidopsis thaliana protein match is: FRIGIDA-like protein (TAIR:AT4G14900.1); Has 1269 Blast hits to 1187 proteins in 101 species: Archae - 0; Bacteria - 22; Metazoa - 72; Fungi - 9; Plants - 1133; Viruses - 0; Other Eukaryotes - 33 (source: NCBI BLink).;FRIGIDA-like protein | transcript=eq;prot=eq; | + | 5 | No |
| AT5G48390 | ath | Defective in meiotic chromosome segregation. It is involved in crossover formation and involved in both male and female meiosis.;Tetratricopeptide repeat (TPR)-like superfamily protein | transcript=eq;prot=eq; | + | 5 | No |