Gene family  

Sub-families
ORTHO002075 (34 genes in 20 species)
ORTHO006931 (23 genes in 16 species)
ORTHO007393 (23 genes in 17 species)
View all sub-families (22)
 
Keywords


Overview of gene family content




aly
Arabidopsis lyrata (15 genes)
ath
Arabidopsis thaliana (15 genes)
bdi
Brachypodium distachyon (13 genes)
cpa
Carica papaya (10 genes)
fve
Fragaria vesca (9 genes)
gma
Glycine max (22 genes)
lja
Lotus japonicus (9 genes)
mdo
Malus domestica (16 genes)
mes
Manihot esculenta (15 genes)
mtr
Medicago truncatula (10 genes)
osa
Oryza sativa ssp. japonica (13 genes)
osaindica
Oryza sativa ssp. indica (14 genes)
ppa
Physcomitrella patens (12 genes)
ptr
Populus trichocarpa (15 genes)
rco
Ricinus communis (9 genes)
sbi
Sorghum bicolor (13 genes)
smo
Selaginella moellendorffii (5 genes)
tca
Theobroma cacao (12 genes)
vvi
Vitis vinifera (17 genes)
zma
Zea mays (17 genes)



The gene family HOM000340 has 261 genes in 20 species (12 outlier genes).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
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Index of genes with 1 constraints:

Page 1 of 14, showing 20 records out of 261 total, starting on record 1, ending on 20

gene_id species description comment strand chr outlier
AL1G17630 aly name=fgenesh2_kg.1__1825__AT1G16750.1;pid=471871;prot=eq;tid=471871 - scaffold_1 No
AL1G22310 aly name=fgenesh2_kg.1__2297__AT1G21060.1;pid=472343;prot=eq;tid=472343 + scaffold_1 No
AL1G38530 aly name=fgenesh1_pm.C_scaffold_1002868;pid=314088;prot=eq;tid=314088 + scaffold_1 No
AL2G25570 aly name=fgenesh2_kg.2__1950__AT1G76620.1;pid=476820;prot=eq;tid=476820 + scaffold_2 No
AL3G12950 aly name=fgenesh2_kg.3__1310__AT3G12540.1;pid=478609;prot=eq;tid=478609 + scaffold_3 No
AL3G13470 aly name=fgenesh1_pm.C_scaffold_3001088;pid=318072;prot=eq;tid=318072 - scaffold_3 No
AL3G20500 aly name=fgenesh1_pm.C_scaffold_3001667;pid=318651;prot=eq;tid=318651 + scaffold_3 No
AL4G03460 aly name=fgenesh2_kg.4__294__AT2G23700.1;pid=481234;prot=eq;tid=481234 - scaffold_4 No
AL4G26180 aly name=fgenesh2_kg.4__2049__AT2G39690.2;pid=482989;prot=eq;tid=482989 + scaffold_4 No
AL7G03680 aly name=fgenesh2_kg.7__356__AT4G37080.1;pid=490923;prot=eq;tid=490923 + scaffold_7 No
AL7G03890 aly name=scaffold_700413.1;pid=912671;prot=eq;tid=944184 - scaffold_7 No
AL8G00550 aly name=fgenesh2_kg.8__60__AT5G47380.1;pid=494244;prot=eq;tid=494244 + scaffold_8 No
AL8G08360 aly name=fgenesh1_pm.C_scaffold_8000475;pid=331132;prot=eq;tid=331132 + scaffold_8 No
AL8G26860 aly name=fgenesh2_kg.8__2036__AT5G60720.1;pid=496220;prot=eq;tid=496220 - scaffold_8 No
AL8G34070 aly name=fgenesh2_kg.8__2759__AT5G66600.1;pid=496943;prot=eq;tid=496943 + scaffold_8 No
AT1G16750 ath Protein of unknown function, DUF547; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF547 (InterPro:IPR006869); BEST Arabidopsis thaliana protein match is: Protein of unknown function, DUF547 (TAIR:AT3G13000.2); Has 699 Blast hits to 674 proteins in 105 species: Archae - 2; Bacteria - 80; Metazoa - 34; Fungi - 2; Plants - 533; Viruses - 0; Other Eukaryotes - 48 (source: NCBI BLink).;Protein of unknown function, DUF547 transcript=eq;prot=eq; - 1 No
AT1G21060 ath Protein of unknown function, DUF547; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF547 (InterPro:IPR006869); BEST Arabidopsis thaliana protein match is: Protein of unknown function, DUF547 (TAIR:AT1G76620.1); Has 536 Blast hits to 524 proteins in 67 species: Archae - 0; Bacteria - 34; Metazoa - 26; Fungi - 3; Plants - 441; Viruses - 0; Other Eukaryotes - 32 (source: NCBI BLink).;Protein of unknown function, DUF547 transcript=eq;prot=eq; + 1 No
AT1G43020 ath Protein of unknown function, DUF547; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF547 (InterPro:IPR006869); BEST Arabidopsis thaliana protein match is: Protein of unknown function, DUF547 (TAIR:AT1G21060.1); Has 538 Blast hits to 520 proteins in 64 species: Archae - 4; Bacteria - 30; Metazoa - 26; Fungi - 0; Plants - 451; Viruses - 0; Other Eukaryotes - 27 (source: NCBI BLink).;Protein of unknown function, DUF547 transcript=eq;prot=eq; + 1 No
AT1G76620 ath Protein of unknown function, DUF547; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF547 (InterPro:IPR006869); BEST Arabidopsis thaliana protein match is: Protein of unknown function, DUF547 (TAIR:AT1G21060.1); Has 866 Blast hits to 747 proteins in 129 species: Archae - 0; Bacteria - 108; Metazoa - 79; Fungi - 87; Plants - 458; Viruses - 1; Other Eukaryotes - 133 (source: NCBI BLink).;Protein of unknown function, DUF547 transcript=eq;prot=eq; + 1 No
AT2G23700 ath Protein of unknown function, DUF547; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF547 (InterPro:IPR006869); BEST Arabidopsis thaliana protein match is: Protein of unknown function, DUF547 (TAIR:AT5G66600.2); Has 867 Blast hits to 688 proteins in 125 species: Archae - 4; Bacteria - 86; Metazoa - 75; Fungi - 16; Plants - 587; Viruses - 0; Other Eukaryotes - 99 (source: NCBI BLink).;Protein of unknown function, DUF547 transcript=eq;prot=eq; - 2 No
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