Gene family 
- Id
- HOM000334
- Method
- BLASTP E_value=1e-05 MCL_I=2
- Sequences
- Sub-families
-
ORTHO001215 (40 genes in 22 species)
ORTHO001227 (40 genes in 23 species)
ORTHO001438 (38 genes in 23 species)
View all sub-families (15)
- Keywords
-
Overview of gene family content
- aly
- Arabidopsis lyrata (5 genes)
- ath
- Arabidopsis thaliana (6 genes)
- bdi
- Brachypodium distachyon (10 genes)
- cpa
- Carica papaya (8 genes)
- cre
- Chlamydomonas reinhardtii (9 genes)
- fve
- Fragaria vesca (8 genes)
- gma
- Glycine max (17 genes)
- lja
- Lotus japonicus (20 genes)
- mdo
- Malus domestica (27 genes)
- mes
- Manihot esculenta (11 genes)
- mrcc299
- Micromonas sp. RCC299 (10 genes)
- mtr
- Medicago truncatula (5 genes)
- olu
- Ostreococcus lucimarinus (6 genes)
- osa
- Oryza sativa ssp. japonica (11 genes)
- osaindica
- Oryza sativa ssp. indica (15 genes)
- ota
- Ostreococcus tauri (6 genes)
- ppa
- Physcomitrella patens (16 genes)
- ptr
- Populus trichocarpa (11 genes)
- rco
- Ricinus communis (8 genes)
- sbi
- Sorghum bicolor (9 genes)
- smo
- Selaginella moellendorffii (4 genes)
- tca
- Theobroma cacao (10 genes)
- vca
- Volvox carteri (8 genes)
- vvi
- Vitis vinifera (10 genes)
- zma
- Zea mays (13 genes)
The gene family HOM000334 has 263 genes in 25 species (27 outlier genes).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
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Index of genes with 1 constraints:
- gene family : HOM000334
Page 1 of 14, showing 20 records out of 263 total, starting on record 1, ending on 20
| gene_id | species | description | comment | strand | chr | outlier |
|---|---|---|---|---|---|---|
| AL1G12020 | aly | name=fgenesh1_pm.C_scaffold_1000980;pid=312200;prot=eq;tid=312200 | + | scaffold_1 | No | |
| AL1G34220 | aly | name=fgenesh2_kg.1__3426__AT1G32900.1;pid=473472;prot=eq;tid=473472 | - | scaffold_1 | No | |
| AL3G00930 | aly | name=fgenesh2_kg.3__112__AT3G01180.1;pid=477411;prot=eq;tid=477411 | + | scaffold_3 | No | |
| AL5G01810 | aly | name=scaffold_500197.1;pid=904493;prot=eq;tid=936006 | + | scaffold_5 | Yes | |
| AL6G24260 | aly | name=fgenesh2_kg.6__2423__AT5G24300.1;pid=489289;prot=eq;tid=489289 | + | scaffold_6 | No | |
| AT1G11720 | ath | Encodes a starch synthase that in addition to its role in starch biosynthesis also has a negative regulatory function in the biosynthesis of transient starch. The protein apparently contains a starch-binding domain (SBD).;starch synthase 3 | transcript=eq;prot=eq; | + | 1 | No |
| AT1G32900 | ath | UDP-Glycosyltransferase superfamily protein; FUNCTIONS IN: protein binding, transferase activity, transferring glycosyl groups; INVOLVED IN: biosynthetic process, glucan biosynthetic process; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glycogen/starch synthases, ADP-glucose type (InterPro:IPR011835), Starch synthase, catalytic domain (InterPro:IPR013534), Glycosyl transferase, group 1 (InterPro:IPR001296); BEST Arabidopsis thaliana protein match is: starch synthase 2 (TAIR:AT3G01180.1); Has 13950 Blast hits to 13932 proteins in 3602 species: Archae - 351; Bacteria - 6813; Metazoa - 7; Fungi - 173; Plants - 5477; Viruses - 0; Other Eukaryotes - 1129 (source: NCBI BLink).;UDP-Glycosyltransferase superfamily protein | transcript=eq;prot=eq; | - | 1 | No |
| AT3G01180 | ath | starch synthase 2 (SS2); FUNCTIONS IN: transferase activity, transferring glycosyl groups; INVOLVED IN: cellulose biosynthetic process, glucan biosynthetic process, biosynthetic process, glycogen biosynthetic process; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glycogen/starch synthases, ADP-glucose type (InterPro:IPR011835), Starch synthase, catalytic domain (InterPro:IPR013534), Glycosyl transferase, group 1 (InterPro:IPR001296); BEST Arabidopsis thaliana protein match is: Glycogen/starch synthases, ADP-glucose type (TAIR:AT5G24300.2); Has 15927 Blast hits to 11968 proteins in 3394 species: Archae - 233; Bacteria - 4788; Metazoa - 1175; Fungi - 1070; Plants - 4691; Viruses - 26; Other Eukaryotes - 3944 (source: NCBI BLink).;starch synthase 2 | transcript=eq;prot=eq; | - | 3 | No |
| AT4G18240 | ath | starch synthase 4 (SS4); FUNCTIONS IN: transferase activity, transferring glycosyl groups; INVOLVED IN: starch metabolic process; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glycogen/starch synthases, ADP-glucose type (InterPro:IPR011835), Starch synthase, catalytic domain (InterPro:IPR013534), Glycosyl transferase, group 1 (InterPro:IPR001296); BEST Arabidopsis thaliana protein match is: starch synthase 3 (TAIR:AT1G11720.1); Has 55451 Blast hits to 38117 proteins in 4040 species: Archae - 1014; Bacteria - 10985; Metazoa - 22418; Fungi - 3875; Plants - 6050; Viruses - 242; Other Eukaryotes - 10867 (source: NCBI BLink).;starch synthase 4 | transcript=eq;prot=eq; | + | 4 | No |
| AT5G24300 | ath | SSI is a plastidial enzyme and crucial for the synthesis of normal amylopectin in the leaves of Arabidopsis. The absence of SSI results in a deficiency in the number of shorter glucans which in turn affect the formation and connection of the amylopectin clusters in starch.;Glycogen/starch synthases, ADP-glucose type | transcript=eq;prot=eq; | + | 5 | No |
| AT5G65685 | ath | UDP-Glycosyltransferase superfamily protein; FUNCTIONS IN: starch synthase activity; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Starch synthase, catalytic domain (InterPro:IPR013534); BEST Arabidopsis thaliana protein match is: starch synthase 4 (TAIR:AT4G18240.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).;UDP-Glycosyltransferase superfamily protein | transcript=eq;prot=eq; | - | 5 | No |
| BD1G45130 | bdi | Starch Synthase | pid=Bradi1g45130.1;tid=Bradi1g45130.1;GeneName=Bradi1g45130;Name=BdSSIIA;transcript=eq;prot=eq | - | Bd1 | No |
| BD1G48610 | bdi | Starch Synthase | pid=Bradi1g48610.1;tid=Bradi1g48610.1;GeneName=Bradi1g48610;Name=BdSSI;transcript=eq;prot=eq | + | Bd1 | No |
| BD1G50090 | bdi | Starch Synthase | pid=Bradi1g50090.1;tid=Bradi1g50090.1;GeneName=Bradi1g50090;Name=BdSSV;transcript=eq;prot=eq | + | Bd1 | No |
| BD2G18810 | bdi | Starch Synthase | pid=Bradi2g18810.1;tid=Bradi2g18810.1;GeneName=Bradi2g18810;Name=BdSSIV;transcript=eq;prot=eq | - | Bd2 | No |
| BD2G41590 | bdi | Starch Synthase | pid=Bradi2g41590.1;tid=Bradi2g41590.1;GeneName=Bradi2g41590;Name=BdSSVIA;transcript=eq;prot=eq | + | Bd2 | No |
| BD3G15027 | bdi | pid=Bradi3g15027.1;tid=Bradi3g15027.1;GeneName=Bradi3g15027;transcript=eq;prot=eq | - | Bd3 | No | |
| BD3G27260 | bdi | Starch Synthase | pid=Bradi3g27260.1;tid=Bradi3g27260.1;GeneName=Bradi3g27260;Name=BdSSIIC;transcript=eq;prot=eq | + | Bd3 | No |
| BD3G59440 | bdi | Starch Synthase | pid=Bradi3g59440.1;tid=Bradi3g59440.1;GeneName=Bradi3g59440;Name=BdSSIIB;transcript=eq;prot=eq | + | Bd3 | No |
| BD4G00650 | bdi | Starch Synthase | pid=Bradi4g00650.1;tid=Bradi4g00650.1;GeneName=Bradi4g00650;Name=BdSSVIB;transcript=eq;prot=eq | + | Bd4 | No |