Gene family  

Sub-families
ORTHO001215 (40 genes in 22 species)
ORTHO001227 (40 genes in 23 species)
ORTHO001438 (38 genes in 23 species)
View all sub-families (15)
 
Keywords


Overview of gene family content




aly
Arabidopsis lyrata (5 genes)
ath
Arabidopsis thaliana (6 genes)
bdi
Brachypodium distachyon (10 genes)
cpa
Carica papaya (8 genes)
cre
Chlamydomonas reinhardtii (9 genes)
fve
Fragaria vesca (8 genes)
gma
Glycine max (17 genes)
lja
Lotus japonicus (20 genes)
mdo
Malus domestica (27 genes)
mes
Manihot esculenta (11 genes)
mrcc299
Micromonas sp. RCC299 (10 genes)
mtr
Medicago truncatula (5 genes)
olu
Ostreococcus lucimarinus (6 genes)
osa
Oryza sativa ssp. japonica (11 genes)
osaindica
Oryza sativa ssp. indica (15 genes)
ota
Ostreococcus tauri (6 genes)
ppa
Physcomitrella patens (16 genes)
ptr
Populus trichocarpa (11 genes)
rco
Ricinus communis (8 genes)
sbi
Sorghum bicolor (9 genes)
smo
Selaginella moellendorffii (4 genes)
tca
Theobroma cacao (10 genes)
vca
Volvox carteri (8 genes)
vvi
Vitis vinifera (10 genes)
zma
Zea mays (13 genes)



The gene family HOM000334 has 263 genes in 25 species (27 outlier genes).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
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Index of genes with 1 constraints:

Page 1 of 14, showing 20 records out of 263 total, starting on record 1, ending on 20

gene_id species description comment strand chr outlier
AL1G12020 aly name=fgenesh1_pm.C_scaffold_1000980;pid=312200;prot=eq;tid=312200 + scaffold_1 No
AL1G34220 aly name=fgenesh2_kg.1__3426__AT1G32900.1;pid=473472;prot=eq;tid=473472 - scaffold_1 No
AL3G00930 aly name=fgenesh2_kg.3__112__AT3G01180.1;pid=477411;prot=eq;tid=477411 + scaffold_3 No
AL5G01810 aly name=scaffold_500197.1;pid=904493;prot=eq;tid=936006 + scaffold_5 Yes
AL6G24260 aly name=fgenesh2_kg.6__2423__AT5G24300.1;pid=489289;prot=eq;tid=489289 + scaffold_6 No
AT1G11720 ath Encodes a starch synthase that in addition to its role in starch biosynthesis also has a negative regulatory function in the biosynthesis of transient starch. The protein apparently contains a starch-binding domain (SBD).;starch synthase 3 transcript=eq;prot=eq; + 1 No
AT1G32900 ath UDP-Glycosyltransferase superfamily protein; FUNCTIONS IN: protein binding, transferase activity, transferring glycosyl groups; INVOLVED IN: biosynthetic process, glucan biosynthetic process; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glycogen/starch synthases, ADP-glucose type (InterPro:IPR011835), Starch synthase, catalytic domain (InterPro:IPR013534), Glycosyl transferase, group 1 (InterPro:IPR001296); BEST Arabidopsis thaliana protein match is: starch synthase 2 (TAIR:AT3G01180.1); Has 13950 Blast hits to 13932 proteins in 3602 species: Archae - 351; Bacteria - 6813; Metazoa - 7; Fungi - 173; Plants - 5477; Viruses - 0; Other Eukaryotes - 1129 (source: NCBI BLink).;UDP-Glycosyltransferase superfamily protein transcript=eq;prot=eq; - 1 No
AT3G01180 ath starch synthase 2 (SS2); FUNCTIONS IN: transferase activity, transferring glycosyl groups; INVOLVED IN: cellulose biosynthetic process, glucan biosynthetic process, biosynthetic process, glycogen biosynthetic process; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glycogen/starch synthases, ADP-glucose type (InterPro:IPR011835), Starch synthase, catalytic domain (InterPro:IPR013534), Glycosyl transferase, group 1 (InterPro:IPR001296); BEST Arabidopsis thaliana protein match is: Glycogen/starch synthases, ADP-glucose type (TAIR:AT5G24300.2); Has 15927 Blast hits to 11968 proteins in 3394 species: Archae - 233; Bacteria - 4788; Metazoa - 1175; Fungi - 1070; Plants - 4691; Viruses - 26; Other Eukaryotes - 3944 (source: NCBI BLink).;starch synthase 2 transcript=eq;prot=eq; - 3 No
AT4G18240 ath starch synthase 4 (SS4); FUNCTIONS IN: transferase activity, transferring glycosyl groups; INVOLVED IN: starch metabolic process; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glycogen/starch synthases, ADP-glucose type (InterPro:IPR011835), Starch synthase, catalytic domain (InterPro:IPR013534), Glycosyl transferase, group 1 (InterPro:IPR001296); BEST Arabidopsis thaliana protein match is: starch synthase 3 (TAIR:AT1G11720.1); Has 55451 Blast hits to 38117 proteins in 4040 species: Archae - 1014; Bacteria - 10985; Metazoa - 22418; Fungi - 3875; Plants - 6050; Viruses - 242; Other Eukaryotes - 10867 (source: NCBI BLink).;starch synthase 4 transcript=eq;prot=eq; + 4 No
AT5G24300 ath SSI is a plastidial enzyme and crucial for the synthesis of normal amylopectin in the leaves of Arabidopsis. The absence of SSI results in a deficiency in the number of shorter glucans which in turn affect the formation and connection of the amylopectin clusters in starch.;Glycogen/starch synthases, ADP-glucose type transcript=eq;prot=eq; + 5 No
AT5G65685 ath UDP-Glycosyltransferase superfamily protein; FUNCTIONS IN: starch synthase activity; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Starch synthase, catalytic domain (InterPro:IPR013534); BEST Arabidopsis thaliana protein match is: starch synthase 4 (TAIR:AT4G18240.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).;UDP-Glycosyltransferase superfamily protein transcript=eq;prot=eq; - 5 No
BD1G45130 bdi Starch Synthase pid=Bradi1g45130.1;tid=Bradi1g45130.1;GeneName=Bradi1g45130;Name=BdSSIIA;transcript=eq;prot=eq - Bd1 No
BD1G48610 bdi Starch Synthase pid=Bradi1g48610.1;tid=Bradi1g48610.1;GeneName=Bradi1g48610;Name=BdSSI;transcript=eq;prot=eq + Bd1 No
BD1G50090 bdi Starch Synthase pid=Bradi1g50090.1;tid=Bradi1g50090.1;GeneName=Bradi1g50090;Name=BdSSV;transcript=eq;prot=eq + Bd1 No
BD2G18810 bdi Starch Synthase pid=Bradi2g18810.1;tid=Bradi2g18810.1;GeneName=Bradi2g18810;Name=BdSSIV;transcript=eq;prot=eq - Bd2 No
BD2G41590 bdi Starch Synthase pid=Bradi2g41590.1;tid=Bradi2g41590.1;GeneName=Bradi2g41590;Name=BdSSVIA;transcript=eq;prot=eq + Bd2 No
BD3G15027 bdi pid=Bradi3g15027.1;tid=Bradi3g15027.1;GeneName=Bradi3g15027;transcript=eq;prot=eq - Bd3 No
BD3G27260 bdi Starch Synthase pid=Bradi3g27260.1;tid=Bradi3g27260.1;GeneName=Bradi3g27260;Name=BdSSIIC;transcript=eq;prot=eq + Bd3 No
BD3G59440 bdi Starch Synthase pid=Bradi3g59440.1;tid=Bradi3g59440.1;GeneName=Bradi3g59440;Name=BdSSIIB;transcript=eq;prot=eq + Bd3 No
BD4G00650 bdi Starch Synthase pid=Bradi4g00650.1;tid=Bradi4g00650.1;GeneName=Bradi4g00650;Name=BdSSVIB;transcript=eq;prot=eq + Bd4 No
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