Gene family  

Sub-families
ORTHO001433 (38 genes in 25 species)
ORTHO001529 (37 genes in 20 species)
ORTHO001775 (35 genes in 20 species)
View all sub-families (17)
 
Keywords


Overview of gene family content




aly
Arabidopsis lyrata (12 genes)
ath
Arabidopsis thaliana (9 genes)
bdi
Brachypodium distachyon (9 genes)
cpa
Carica papaya (15 genes)
cre
Chlamydomonas reinhardtii (3 genes)
fve
Fragaria vesca (9 genes)
gma
Glycine max (22 genes)
lja
Lotus japonicus (13 genes)
mdo
Malus domestica (22 genes)
mes
Manihot esculenta (14 genes)
mrcc299
Micromonas sp. RCC299 (5 genes)
mtr
Medicago truncatula (10 genes)
olu
Ostreococcus lucimarinus (4 genes)
osa
Oryza sativa ssp. japonica (12 genes)
osaindica
Oryza sativa ssp. indica (11 genes)
ota
Ostreococcus tauri (3 genes)
ppa
Physcomitrella patens (7 genes)
ptr
Populus trichocarpa (12 genes)
rco
Ricinus communis (8 genes)
sbi
Sorghum bicolor (15 genes)
smo
Selaginella moellendorffii (6 genes)
tca
Theobroma cacao (9 genes)
vca
Volvox carteri (6 genes)
vvi
Vitis vinifera (8 genes)
zma
Zea mays (20 genes)



The gene family HOM000331 has 264 genes in 25 species (30 outlier genes).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
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Index of genes with 1 constraints:

Page 1 of 14, showing 20 records out of 264 total, starting on record 1, ending on 20

gene_id species description comment strand chr outlier
AL1G08280 aly name=fgenesh1_pg.C_scaffold_1000714;pid=334149;prot=eq;tid=334149 + scaffold_1 No
AL1G32080 aly name=fgenesh1_pg.C_scaffold_1002753;pid=336188;prot=eq;tid=336188 - scaffold_1 No
AL2G01640 aly name=scaffold_200168.1;pid=893094;prot=eq;tid=924607 + scaffold_2 No
AL4G10220 aly name=Al_scaffold_0004_994;pid=868831;prot=eq;tid=900344 + scaffold_4 No
AL4G20190 aly name=Al_scaffold_0004_1980;pid=869817;prot=eq;tid=901330 - scaffold_4 No
AL4G25390 aly name=fgenesh2_kg.4__1974__AT2G38950.1;pid=482914;prot=eq;tid=482914 + scaffold_4 No
AL5G17280 aly name=fgenesh2_kg.5__1196__AT3G48430.1;pid=485204;prot=eq;tid=485204 + scaffold_5 No
AL5G17290 aly name=scaffold_501791.1;pid=906087;prot=eq;tid=937600 + scaffold_5 No
AL6G03570 aly name=fgenesh2_kg.6__338__AT5G04240.1;pid=487204;prot=eq;tid=487204 + scaffold_6 No
AL7G22050 aly name=fgenesh2_kg.7__2254__AT4G20400.1;pid=492821;prot=eq;tid=492821 - scaffold_7 No
AL8G01220 aly name=scaffold_800132.1;pid=916732;prot=eq;tid=948245 - scaffold_8 No
AL8G17920 aly name=scaffold_801802.1;pid=918402;prot=eq;tid=949915 - scaffold_8 No
AT1G08620 ath PKDM7D; FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Transcription factor jumonji/aspartyl beta-hydroxylase (InterPro:IPR003347), FY-rich, C-terminal (InterPro:IPR003889), FY-rich, N-terminal (InterPro:IPR003888), Transcription factor jumonji, JmjN (InterPro:IPR003349), Zinc finger, C5HC2-type (InterPro:IPR004198), FY-rich, C-terminal subgroup (InterPro:IPR018516), Transcription factor jumonji (InterPro:IPR013129), FY-rich, N-terminal subgroup (InterPro:IPR018518); BEST Arabidopsis thaliana protein match is: Transcription factor jumonji (jmj) family protein / zinc finger (C5HC2 type) family protein (TAIR:AT1G30810.2); Has 2173 Blast hits to 1649 proteins in 190 species: Archae - 0; Bacteria - 2; Metazoa - 1159; Fungi - 446; Plants - 392; Viruses - 0; Other Eukaryotes - 174 (source: NCBI BLink).;Transcription factor jumonji (jmj) family protein / zinc finger (C5HC2 type) family protein transcript=eq;prot=eq; + 1 No
AT1G30810 ath Transcription factor jumonji (jmj) family protein / zinc finger (C5HC2 type) family protein; FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Transcription factor jumonji/aspartyl beta-hydroxylase (InterPro:IPR003347), FY-rich, C-terminal (InterPro:IPR003889), FY-rich, N-terminal (InterPro:IPR003888), Transcription factor jumonji, JmjN (InterPro:IPR003349), Zinc finger, C5HC2-type (InterPro:IPR004198), Transcription factor jumonji (InterPro:IPR013129), FY-rich, C-terminal subgroup (InterPro:IPR018516), FY-rich, N-terminal subgroup (InterPro:IPR018518); BEST Arabidopsis thaliana protein match is: Transcription factor jumonji (jmj) family protein / zinc finger (C5HC2 type) family protein (TAIR:AT2G34880.1); Has 2138 Blast hits to 1613 proteins in 188 species: Archae - 0; Bacteria - 2; Metazoa - 1141; Fungi - 449; Plants - 371; Viruses - 0; Other Eukaryotes - 175 (source: NCBI BLink).;Transcription factor jumonji (jmj) family protein / zinc finger (C5HC2 type) family protein transcript=eq;prot=eq; - 1 No
AT1G63490 ath transcription factor jumonji (jmjC) domain-containing protein; FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; LOCATED IN: nucleus; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Transcription factor jumonji/aspartyl beta-hydroxylase (InterPro:IPR003347), PLU-1-like (InterPro:IPR013637), Zinc finger, PHD-type, conserved site (InterPro:IPR019786), Zinc finger, PHD-type (InterPro:IPR001965), Zinc finger, C5HC2-type (InterPro:IPR004198), Transcription factor jumonji (InterPro:IPR013129), Zinc finger, FYVE/PHD-type (InterPro:IPR011011); BEST Arabidopsis thaliana protein match is: Transcription factor jumonji (jmj) family protein / zinc finger (C5HC2 type) family protein (TAIR:AT1G08620.2); Has 2288 Blast hits to 1952 proteins in 202 species: Archae - 0; Bacteria - 15; Metazoa - 1333; Fungi - 459; Plants - 289; Viruses - 0; Other Eukaryotes - 192 (source: NCBI BLink).;transcription factor jumonji (jmjC) domain-containing protein transcript=eq;prot=eq; - 1 No
AT2G34880 ath maternal effect embryo arrest 27 (MEE27); FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; INVOLVED IN: embryo development ending in seed dormancy, regulation of transcription, pollen development; LOCATED IN: nucleus; EXPRESSED IN: sperm cell; CONTAINS InterPro DOMAIN/s: Transcription factor jumonji/aspartyl beta-hydroxylase (InterPro:IPR003347), FY-rich, C-terminal (InterPro:IPR003889), FY-rich, N-terminal (InterPro:IPR003888), Transcription factor jumonji, JmjN (InterPro:IPR003349), Zinc finger, C5HC2-type (InterPro:IPR004198), FY-rich, C-terminal subgroup (InterPro:IPR018516), Transcription factor jumonji (InterPro:IPR013129), FY-rich, N-terminal subgroup (InterPro:IPR018518); BEST Arabidopsis thaliana protein match is: Transcription factor jumonji (jmj) family protein / zinc finger (C5HC2 type) family protein (TAIR:AT1G30810.2); Has 2070 Blast hits to 1543 proteins in 194 species: Archae - 0; Bacteria - 0; Metazoa - 1091; Fungi - 459; Plants - 363; Viruses - 0; Other Eukaryotes - 157 (source: NCBI BLink).;Transcription factor jumonji (jmj) family protein / zinc finger (C5HC2 type) family protein transcript=eq;prot=eq; - 2 No
AT2G38950 ath Transcription factor jumonji (jmj) family protein / zinc finger (C5HC2 type) family protein; FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Transcription factor jumonji/aspartyl beta-hydroxylase (InterPro:IPR003347), Zinc finger, C5HC2-type (InterPro:IPR004198), Transcription factor jumonji (InterPro:IPR013129), Transcription factor jumonji, JmjN (InterPro:IPR003349); BEST Arabidopsis thaliana protein match is: Transcription factor jumonji (jmj) family protein / zinc finger (C5HC2 type) family protein (TAIR:AT1G08620.2); Has 1894 Blast hits to 1417 proteins in 192 species: Archae - 0; Bacteria - 0; Metazoa - 1050; Fungi - 421; Plants - 287; Viruses - 0; Other Eukaryotes - 136 (source: NCBI BLink).;Transcription factor jumonji (jmj) family protein / zinc finger (C5HC2 type) family protein transcript=eq;prot=eq; + 2 No
AT3G48430 ath Relative of Early Flowering 6 (REF6) encodes a Jumonji N/C and zinc finger domain-containing protein that acts as a positive regulator of flowering in an FLC-dependent pathway. REF6 mutants have hyperacetylation of histone H4 at the FLC locus. REF6 interacts with BES1 in a Y2H assay and in vitro. REF6 may play a role in brassinoteroid signaling by affecting histone methylation in the promoters of BR-responsive genes. It is most closely related to the JHDM3 subfamily of JmjN/C proteins.;relative of early flowering 6 transcript=eq;prot=eq; + 3 No
AT4G20400 ath Encodes a histone H3K4 demethylase repressing floral transition.;JUMONJI 14 transcript=eq;prot=eq; + 4 No
AT5G04240 ath Early Flowering 6 (ELF6) encodes a Jumonji N/C and zinc finger domain-containing protein that acts as a repressor in the photoperiod pathway. ELF6 interacts with BES1 in a Y2H assay, in vitro, and in Arabidosis protoplasts (based on BiFC). ELF6 may play a role in brassinosteroid signaling by affecting histone methylation in the promoters of BR-responsive genes.;Zinc finger (C2H2 type) family protein / transcription factor jumonji (jmj) family protein transcript=eq;prot=eq; + 5 No
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