Gene family  

Sub-families
ORTHO000032 (195 genes in 20 species)
ORTHO039834 (3 genes in 2 species)
ORTHO073315 (2 genes in 1 species)
View all sub-families (5)
 
Keywords


Overview of gene family content




aly
Arabidopsis lyrata (7 genes)
ath
Arabidopsis thaliana (8 genes)
bdi
Brachypodium distachyon (9 genes)
cpa
Carica papaya (11 genes)
fve
Fragaria vesca (8 genes)
gma
Glycine max (15 genes)
lja
Lotus japonicus (17 genes)
mdo
Malus domestica (33 genes)
mes
Manihot esculenta (11 genes)
mtr
Medicago truncatula (18 genes)
osa
Oryza sativa ssp. japonica (10 genes)
osaindica
Oryza sativa ssp. indica (15 genes)
ppa
Physcomitrella patens (6 genes)
ptr
Populus trichocarpa (16 genes)
rco
Ricinus communis (21 genes)
sbi
Sorghum bicolor (11 genes)
smo
Selaginella moellendorffii (4 genes)
tca
Theobroma cacao (17 genes)
vvi
Vitis vinifera (20 genes)
zma
Zea mays (10 genes)



The gene family HOM000326 has 267 genes in 20 species (6 outlier genes).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
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Index of genes with 1 constraints:

Page 1 of 14, showing 20 records out of 267 total, starting on record 1, ending on 20

gene_id species description comment strand chr outlier
AL1G01810 aly name=fgenesh2_kg.1__176__AT1G02640.1;pid=470222;prot=eq;tid=470222 + scaffold_1 No
AL2G27040 aly name=scaffold_202772.1;pid=895698;prot=eq;tid=927211 - scaffold_2 No
AL3G21220 aly name=fgenesh1_pm.C_scaffold_3001732;pid=318716;prot=eq;tid=318716 - scaffold_3 No
AL6G09380 aly name=fgenesh1_pm.C_scaffold_6000738;pid=325518;prot=eq;tid=325518 - scaffold_6 No
AL6G10270 aly name=fgenesh2_kg.6__1023__AT5G10560.1;pid=487889;prot=eq;tid=487889 - scaffold_6 No
AL8G13050 aly name=scaffold_801317.1;pid=917917;prot=eq;tid=949430 - scaffold_8 No
AL8G31290 aly name=fgenesh2_kg.8__2486__AT5G64570.1;pid=496670;prot=eq;tid=496670 - scaffold_8 No
AT1G02640 ath encodes a protein similar to a beta-xylosidase located in the extracellular matrix. This is a member of glycosyl hydrolase family 3 and has six other closely related members.;beta-xylosidase 2 transcript=eq;prot=eq; + 1 No
AT1G78060 ath Glycosyl hydrolase family protein; FUNCTIONS IN: hydrolase activity, hydrolyzing O-glycosyl compounds; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: apoplast, cell wall, chloroplast, plant-type cell wall; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, family 3, N-terminal (InterPro:IPR001764), Glycoside hydrolase, family 3, C-terminal (InterPro:IPR002772), Glycoside hydrolase, catalytic core (InterPro:IPR017853); BEST Arabidopsis thaliana protein match is: Glycosyl hydrolase family protein (TAIR:AT5G10560.1); Has 9183 Blast hits to 7917 proteins in 1177 species: Archae - 63; Bacteria - 5533; Metazoa - 16; Fungi - 1604; Plants - 525; Viruses - 0; Other Eukaryotes - 1442 (source: NCBI BLink).;Glycosyl hydrolase family protein transcript=eq;prot=eq; - 1 No
AT3G19620 ath Glycosyl hydrolase family protein; FUNCTIONS IN: hydrolase activity, hydrolyzing O-glycosyl compounds; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: cell wall; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: LP.04 four leaves visible, 4 anthesis, LP.10 ten leaves visible, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, family 3, N-terminal (InterPro:IPR001764), Glycoside hydrolase, family 3, C-terminal (InterPro:IPR002772), Glycoside hydrolase, catalytic core (InterPro:IPR017853); BEST Arabidopsis thaliana protein match is: beta-D-xylosidase 4 (TAIR:AT5G64570.1); Has 9087 Blast hits to 7801 proteins in 1160 species: Archae - 63; Bacteria - 5399; Metazoa - 17; Fungi - 1628; Plants - 528; Viruses - 0; Other Eukaryotes - 1452 (source: NCBI BLink).;Glycosyl hydrolase family protein transcript=eq;prot=eq; - 3 No
AT5G09700 ath Glycosyl hydrolase family protein; FUNCTIONS IN: hydrolase activity, hydrolyzing O-glycosyl compounds; INVOLVED IN: carbohydrate metabolic process; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, family 3, N-terminal (InterPro:IPR001764), Glycoside hydrolase, family 3, C-terminal (InterPro:IPR002772), Glycoside hydrolase, catalytic core (InterPro:IPR017853); BEST Arabidopsis thaliana protein match is: beta-xylosidase 3 (TAIR:AT5G09730.1).;Glycosyl hydrolase family protein transcript=eq;prot=eq; - 5 No
AT5G09730 ath encodes a protein similar to a beta-xylosidase located in the extracellular matrix. This is a member of glycosyl hydrolase family 3 and has six other closely related members.;beta-xylosidase 3 transcript=eq;prot=eq; - 5 No
AT5G10560 ath Glycosyl hydrolase family protein; FUNCTIONS IN: xylan 1,4-beta-xylosidase activity, hydrolase activity, hydrolyzing O-glycosyl compounds; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: plasma membrane, vacuole; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, family 3, N-terminal (InterPro:IPR001764), Glycoside hydrolase, family 3, C-terminal (InterPro:IPR002772), Glycoside hydrolase, catalytic core (InterPro:IPR017853); BEST Arabidopsis thaliana protein match is: Glycosyl hydrolase family protein (TAIR:AT1G78060.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).;Glycosyl hydrolase family protein transcript=eq;prot=eq; - 5 No
AT5G49360 ath Encodes a bifunctional {beta}-D-xylosidase/{alpha}-L-arabinofuranosidase required for pectic arabinan modification. Located in the extracellular matrix. Gene is expressed specifically in tissues undergoing secondary wall thickening. This is a member of glycosyl hydrolase family 3 and has six other closely related members.;beta-xylosidase 1 transcript=eq;prot=eq; - 5 No
AT5G64570 ath Encodes a beta-d-xylosidase that belongs to family 3 of glycoside hydrolases.;beta-D-xylosidase 4 transcript=eq;prot=eq; - 5 No
BD2G11410 bdi Glycosyl hydrolase (GH), subfamily GH3 pid=Bradi2g11410.1;tid=Bradi2g11410.1;GeneName=Bradi2g11410;Name=BdGH3_5;transcript=eq;prot=eq + Bd2 No
BD2G48457 bdi pid=Bradi2g48457.1;tid=Bradi2g48457.1;GeneName=Bradi2g48457;transcript=eq;prot=eq - Bd2 No
BD3G59020 bdi Glycosyl hydrolase (GH), subfamily GH3 pid=Bradi3g59020.1;tid=Bradi3g59020.1;GeneName=Bradi3g59020;Name=BdGH3_9;transcript=eq;prot=eq + Bd3 No
BD4G16026 bdi pid=Bradi4g16026.1;tid=Bradi4g16026.1;GeneName=Bradi4g16026;transcript=eq;prot=eq - Bd4 No
BD4G20197 bdi pid=Bradi4g20197.1;tid=Bradi4g20197.1;GeneName=Bradi4g20197;transcript=eq;prot=eq - Bd4 No
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