Gene family  

Sub-families
ORTHO000127 (100 genes in 22 species)
ORTHO001976 (34 genes in 19 species)
ORTHO002611 (31 genes in 16 species)
View all sub-families (12)
 
Keywords


Overview of gene family content




aly
Arabidopsis lyrata (14 genes)
ath
Arabidopsis thaliana (14 genes)
bdi
Brachypodium distachyon (11 genes)
cpa
Carica papaya (13 genes)
cre
Chlamydomonas reinhardtii (11 genes)
fve
Fragaria vesca (13 genes)
gma
Glycine max (22 genes)
lja
Lotus japonicus (12 genes)
mdo
Malus domestica (18 genes)
mes
Manihot esculenta (16 genes)
mrcc299
Micromonas sp. RCC299 (3 genes)
mtr
Medicago truncatula (10 genes)
olu
Ostreococcus lucimarinus (3 genes)
osa
Oryza sativa ssp. japonica (10 genes)
osaindica
Oryza sativa ssp. indica (11 genes)
ota
Ostreococcus tauri (2 genes)
ppa
Physcomitrella patens (13 genes)
ptr
Populus trichocarpa (16 genes)
rco
Ricinus communis (9 genes)
sbi
Sorghum bicolor (11 genes)
smo
Selaginella moellendorffii (2 genes)
tca
Theobroma cacao (10 genes)
vca
Volvox carteri (5 genes)
vvi
Vitis vinifera (9 genes)
zma
Zea mays (9 genes)



The gene family HOM000325 has 267 genes in 25 species (9 outlier genes).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
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Index of genes with 1 constraints:

Page 1 of 14, showing 20 records out of 267 total, starting on record 1, ending on 20

gene_id species description comment strand chr outlier
AL1G09930 aly name=fgenesh2_kg.1__1078__AT1G10090.1;pid=471124;prot=eq;tid=471124 - scaffold_1 No
AL1G12300 aly name=fgenesh1_pm.C_scaffold_1001006;pid=312226;prot=eq;tid=312226 - scaffold_1 No
AL1G31390 aly name=fgenesh2_kg.1__3213__AT1G30360.1;pid=473259;prot=eq;tid=473259 + scaffold_1 No
AL1G33280 aly name=fgenesh2_kg.1__3346__AT1G32090.1;pid=473392;prot=eq;tid=473392 - scaffold_1 No
AL2G03190 aly name=fgenesh1_pg.C_scaffold_2000249;pid=338150;prot=eq;tid=338150 + scaffold_2 No
AL2G07040 aly name=scaffold_200716.1;pid=893642;prot=eq;tid=925155 - scaffold_2 No
AL2G17700 aly name=fgenesh1_pg.C_scaffold_2001278;pid=339179;prot=eq;tid=339179 - scaffold_2 No
AL3G01010 aly name=fgenesh2_kg.3__119__AT3G01100.1;pid=477418;prot=eq;tid=477418 + scaffold_3 No
AL3G23750 aly name=fgenesh1_pg.C_scaffold_3002075;pid=342312;prot=eq;tid=342312 - scaffold_3 No
AL5G24570 aly name=fgenesh2_kg.5__1846__AT3G54510.2;pid=485854;prot=eq;tid=485854 + scaffold_5 No
AL6G36230 aly name=scaffold_603754.1;pid=911697;prot=eq;tid=943210 + scaffold_6 No
AL6G38330 aly name=fgenesh1_pg.C_scaffold_6003128;pid=352535;prot=eq;tid=352535 - scaffold_6 No
AL7G20200 aly name=fgenesh2_kg.7__2091__AT4G22120.2;pid=492658;prot=eq;tid=492658 + scaffold_7 No
AL7G28340 aly name=fgenesh2_kg.7__2779__AT4G15430.1;pid=493346;prot=eq;tid=493346 - scaffold_7 No
AT1G10090 ath Early-responsive to dehydration stress protein (ERD4); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system, membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF221 (InterPro:IPR003864); BEST Arabidopsis thaliana protein match is: lipases;hydrolases, acting on ester bonds (TAIR:AT1G58520.1); Has 1417 Blast hits to 1261 proteins in 193 species: Archae - 0; Bacteria - 0; Metazoa - 180; Fungi - 691; Plants - 423; Viruses - 0; Other Eukaryotes - 123 (source: NCBI BLink).;Early-responsive to dehydration stress protein (ERD4) transcript=eq;prot=eq; - 1 No
AT1G11960 ath ERD (early-responsive to dehydration stress) family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF221 (InterPro:IPR003864); BEST Arabidopsis thaliana protein match is: ERD (early-responsive to dehydration stress) family protein (TAIR:AT1G62320.1); Has 1452 Blast hits to 1271 proteins in 185 species: Archae - 0; Bacteria - 4; Metazoa - 184; Fungi - 702; Plants - 435; Viruses - 0; Other Eukaryotes - 127 (source: NCBI BLink).;ERD (early-responsive to dehydration stress) family protein transcript=eq;prot=eq; - 1 No
AT1G30360 ath early-responsive to dehydration 4 (ERD4); INVOLVED IN: response to water deprivation; LOCATED IN: plasma membrane, chloroplast, vacuole, membrane, chloroplast envelope; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF221 (InterPro:IPR003864); BEST Arabidopsis thaliana protein match is: ERD (early-responsive to dehydration stress) family protein (TAIR:AT4G02900.1); Has 1361 Blast hits to 1266 proteins in 197 species: Archae - 0; Bacteria - 0; Metazoa - 183; Fungi - 651; Plants - 396; Viruses - 0; Other Eukaryotes - 131 (source: NCBI BLink).;Early-responsive to dehydration stress protein (ERD4) transcript=eq;prot=eq; + 1 No
AT1G32090 ath early-responsive to dehydration stress protein (ERD4); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF221 (InterPro:IPR003864); BEST Arabidopsis thaliana protein match is: ERD (early-responsive to dehydration stress) family protein (TAIR:AT3G21620.1); Has 1524 Blast hits to 1296 proteins in 194 species: Archae - 0; Bacteria - 0; Metazoa - 187; Fungi - 776; Plants - 431; Viruses - 0; Other Eukaryotes - 130 (source: NCBI BLink).;early-responsive to dehydration stress protein (ERD4) transcript=eq;prot=eq; - 1 No
AT1G58520 ath RXW8; FUNCTIONS IN: hydrolase activity, acting on ester bonds, lipase activity; INVOLVED IN: lipid metabolic process; LOCATED IN: endomembrane system, membrane; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF221 (InterPro:IPR003864), Lipase, GDSL, active site (InterPro:IPR008265), Lipase, GDSL (InterPro:IPR001087); BEST Arabidopsis thaliana protein match is: Early-responsive to dehydration stress protein (ERD4) (TAIR:AT1G10090.1); Has 4395 Blast hits to 4270 proteins in 234 species: Archae - 0; Bacteria - 14; Metazoa - 185; Fungi - 607; Plants - 3474; Viruses - 0; Other Eukaryotes - 115 (source: NCBI BLink).;lipases;hydrolases, acting on ester bonds transcript=eq;prot=eq; + 1 No
AT1G62320 ath ERD (early-responsive to dehydration stress) family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system, membrane; EXPRESSED IN: pollen tube; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF221 (InterPro:IPR003864); BEST Arabidopsis thaliana protein match is: ERD (early-responsive to dehydration stress) family protein (TAIR:AT1G11960.1); Has 1443 Blast hits to 1265 proteins in 190 species: Archae - 0; Bacteria - 0; Metazoa - 185; Fungi - 708; Plants - 430; Viruses - 0; Other Eukaryotes - 120 (source: NCBI BLink).;ERD (early-responsive to dehydration stress) family protein transcript=eq;prot=eq; - 1 No
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