Gene family  

Sub-families
ORTHO000593 (53 genes in 25 species)
ORTHO003456 (29 genes in 21 species)
ORTHO008399 (21 genes in 15 species)
View all sub-families (34)
 
Keywords


Overview of gene family content




aly
Arabidopsis lyrata (19 genes)
ath
Arabidopsis thaliana (15 genes)
bdi
Brachypodium distachyon (12 genes)
cpa
Carica papaya (7 genes)
cre
Chlamydomonas reinhardtii (2 genes)
fve
Fragaria vesca (11 genes)
gma
Glycine max (23 genes)
lja
Lotus japonicus (9 genes)
mdo
Malus domestica (20 genes)
mes
Manihot esculenta (12 genes)
mrcc299
Micromonas sp. RCC299 (2 genes)
mtr
Medicago truncatula (11 genes)
olu
Ostreococcus lucimarinus (5 genes)
osa
Oryza sativa ssp. japonica (17 genes)
osaindica
Oryza sativa ssp. indica (18 genes)
ota
Ostreococcus tauri (2 genes)
ppa
Physcomitrella patens (5 genes)
ptr
Populus trichocarpa (16 genes)
rco
Ricinus communis (8 genes)
sbi
Sorghum bicolor (17 genes)
smo
Selaginella moellendorffii (1 gene)
tca
Theobroma cacao (10 genes)
vca
Volvox carteri (2 genes)
vvi
Vitis vinifera (7 genes)
zma
Zea mays (22 genes)



The gene family HOM000310 has 273 genes in 25 species (2 outlier genes).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
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Index of genes with 1 constraints:

Page 1 of 14, showing 20 records out of 273 total, starting on record 1, ending on 20

gene_id species description comment strand chr outlier
AL0G04450 aly name=scaffold_10300006.1;pid=920160;prot=eq;tid=951673 + scaffold_103 No
AL1G06030 aly name=scaffold_100642.1;pid=887848;prot=eq;tid=919361 + scaffold_1 No
AL1G16820 aly name=fgenesh1_pm.C_scaffold_1001362;pid=312582;prot=eq;tid=312582 + scaffold_1 No
AL1G25080 aly name=scaffold_102659.1;pid=889865;prot=eq;tid=921378 - scaffold_1 No
AL1G29030 aly name=scaffold_103116.1;pid=890322;prot=eq;tid=921835 - scaffold_1 No
AL2G19240 aly name=fgenesh2_kg.2__1325__AT1G70660.1;pid=476195;prot=eq;tid=476195 + scaffold_2 No
AL2G19510 aly name=scaffold_201984.1;pid=894910;prot=eq;tid=926423 + scaffold_2 No
AL3G39860 aly name=scaffold_304227.1;pid=900257;prot=eq;tid=931770 + scaffold_3 No
AL4G17100 aly name=scaffold_401757.1;pid=902256;prot=eq;tid=933769 - scaffold_4 No
AL4G21480 aly name=fgenesh2_kg.4__1641__AT2G36060.2;pid=482581;prot=eq;tid=482581 - scaffold_4 No
AL5G11940 aly name=scaffold_501231.1;pid=905527;prot=eq;tid=937040 + scaffold_5 No
AL5G11970 aly name=scaffold_501234.1;pid=905530;prot=eq;tid=937043 + scaffold_5 No
AL5G11980 aly name=Al_scaffold_0005_1149;pid=865670;prot=eq;tid=897183 + scaffold_5 No
AL5G12000 aly name=fgenesh2_kg.5__834__AT3G44260.1;pid=484842;prot=eq;tid=484842 - scaffold_5 No
AL5G22470 aly name=Al_scaffold_0005_2143;pid=866664;prot=eq;tid=898177 - scaffold_5 No
AL6G10700 aly name=fgenesh2_kg.6__1060__AT5G10960.1;pid=487926;prot=eq;tid=487926 + scaffold_6 No
AL6G21890 aly name=fgenesh2_kg.6__2209__AT5G22250.1;pid=489075;prot=eq;tid=489075 - scaffold_6 No
AL8G10100 aly name=scaffold_801028.1;pid=917628;prot=eq;tid=949141 + scaffold_8 No
AL8G18990 aly name=scaffold_801906.1;pid=918506;prot=eq;tid=950019 - scaffold_8 No
AT1G06450 ath Polynucleotidyl transferase, ribonuclease H-like superfamily protein; FUNCTIONS IN: ribonuclease activity, nucleic acid binding; INVOLVED IN: RNA modification; LOCATED IN: nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Ribonuclease CAF1 (InterPro:IPR006941), Polynucleotidyl transferase, ribonuclease H fold (InterPro:IPR012337); BEST Arabidopsis thaliana protein match is: Polynucleotidyl transferase, ribonuclease H-like superfamily protein (TAIR:AT3G44240.1); Has 884 Blast hits to 883 proteins in 223 species: Archae - 0; Bacteria - 0; Metazoa - 252; Fungi - 148; Plants - 363; Viruses - 0; Other Eukaryotes - 121 (source: NCBI BLink).;Polynucleotidyl transferase, ribonuclease H-like superfamily protein transcript=eq;prot=eq; + 1 No
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