Gene family  

Sub-families
ORTHO000121 (102 genes in 25 species)
ORTHO000260 (75 genes in 24 species)
ORTHO014083 (12 genes in 5 species)
View all sub-families (11)
 
Keywords


Overview of gene family content




aly
Arabidopsis lyrata (16 genes)
ath
Arabidopsis thaliana (9 genes)
bdi
Brachypodium distachyon (21 genes)
cpa
Carica papaya (11 genes)
cre
Chlamydomonas reinhardtii (5 genes)
fve
Fragaria vesca (14 genes)
gma
Glycine max (15 genes)
lja
Lotus japonicus (16 genes)
mdo
Malus domestica (24 genes)
mes
Manihot esculenta (9 genes)
mrcc299
Micromonas sp. RCC299 (5 genes)
mtr
Medicago truncatula (9 genes)
olu
Ostreococcus lucimarinus (5 genes)
osa
Oryza sativa ssp. japonica (12 genes)
osaindica
Oryza sativa ssp. indica (13 genes)
ota
Ostreococcus tauri (5 genes)
ppa
Physcomitrella patens (10 genes)
ptr
Populus trichocarpa (10 genes)
rco
Ricinus communis (9 genes)
sbi
Sorghum bicolor (12 genes)
smo
Selaginella moellendorffii (6 genes)
tca
Theobroma cacao (7 genes)
vca
Volvox carteri (11 genes)
vvi
Vitis vinifera (8 genes)
zma
Zea mays (12 genes)



The gene family HOM000309 has 274 genes in 25 species (15 outlier genes).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
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Index of genes with 1 constraints:

Page 1 of 14, showing 20 records out of 274 total, starting on record 1, ending on 20

gene_id species description comment strand chr outlier
AL0G08020 aly name=scaffold_37500002.1;pid=920586;prot=eq;tid=952099 + scaffold_375 No
AL1G19570 aly name=scaffold_102080.1;pid=889286;prot=eq;tid=920799 - scaffold_1 No
AL1G22670 aly name=fgenesh1_pg.C_scaffold_1001952;pid=335387;prot=eq;tid=335387 - scaffold_1 No
AL2G23210 aly name=fgenesh2_kg.2__1695__AT1G74310.1;pid=476565;prot=eq;tid=476565 - scaffold_2 No
AL3G21710 aly name=scaffold_302364.1;pid=898394;prot=eq;tid=929907 - scaffold_3 No
AL4G05940 aly name=fgenesh1_pg.C_scaffold_4000440;pid=344098;prot=eq;tid=344098 + scaffold_4 No
AL4G05950 aly name=scaffold_400611.1;pid=901110;prot=eq;tid=932623 + scaffold_4 No
AL4G05960 aly name=scaffold_400612.1;pid=901111;prot=eq;tid=932624 + scaffold_4 No
AL4G06100 aly name=Al_scaffold_0004_581;pid=868418;prot=eq;tid=899931 - scaffold_4 No
AL5G13560 aly name=fgenesh2_kg.5__927__AT3G45450.1;pid=484935;prot=eq;tid=484935 + scaffold_5 No
AL5G17810 aly name=fgenesh2_kg.5__1232__AT3G48870.1;pid=485240;prot=eq;tid=485240 - scaffold_5 No
AL6G15270 aly name=scaffold_601573.1;pid=909516;prot=eq;tid=941029 - scaffold_6 No
AL7G29490 aly name=scaffold_703127.1;pid=915385;prot=eq;tid=946898 - scaffold_7 No
AL7G29520 aly name=fgenesh2_kg.7__2872__AT4G14670.1;pid=493439;prot=eq;tid=493439 - scaffold_7 No
AL8G15080 aly name=fgenesh2_kg.8__972__AT5G50920.1;pid=495156;prot=eq;tid=495156 - scaffold_8 No
AL8G15290 aly name=fgenesh2_kg.8__989__AT5G51070.1;pid=495173;prot=eq;tid=495173 + scaffold_8 No
AT1G21470 ath BEST Arabidopsis thaliana protein match is: CLPC homologue 1 (TAIR:AT5G50920.1); Has 326 Blast hits to 324 proteins in 95 species: Archae - 0; Bacteria - 130; Metazoa - 0; Fungi - 0; Plants - 67; Viruses - 0; Other Eukaryotes - 129 (source: NCBI BLink). transcript=eq;prot=eq; - 1 Yes
AT1G74310 ath Encodes ClpB1, which belongs to the Casein lytic proteinase/heat shock protein 100 (Clp/Hsp100) family. Involved in refolding of proteins which form aggregates under heat stress. Also known as AtHsp101. AtHsp101 is a cytosolic heat shock protein required for acclimation to high temperature.;heat shock protein 101 transcript=eq;prot=eq; - 1 No
AT2G25140 ath Encodes ClpB4, which belongs to the Casein lytic proteinase/heat shock protein 100 (Clp/Hsp100) family. Targeted to the mitochondrion, also referred to as ClpB-m. Transcripts of ClpB4 accumulate dramatically at high temperatures, suggesting that it may be involved in response to heat stress.;casein lytic proteinase B4 transcript=eq;prot=eq; - 2 No
AT3G45450 ath Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein; FUNCTIONS IN: ATP binding; INVOLVED IN: protein metabolic process; CONTAINS InterPro DOMAIN/s: ATPase, AAA-type, core (InterPro:IPR003959), Clp, N-terminal (InterPro:IPR004176); BEST Arabidopsis thaliana protein match is: CLPC homologue 1 (TAIR:AT5G50920.1); Has 16633 Blast hits to 16323 proteins in 2747 species: Archae - 17; Bacteria - 12492; Metazoa - 5; Fungi - 273; Plants - 382; Viruses - 4; Other Eukaryotes - 3460 (source: NCBI BLink).;Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein transcript=eq;prot=eq; + 3 No
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