Gene family  

Sub-families
ORTHO000340 (66 genes in 21 species)
ORTHO002083 (34 genes in 19 species)
ORTHO003514 (29 genes in 21 species)
View all sub-families (17)
 
Keywords


Overview of gene family content




aly
Arabidopsis lyrata (10 genes)
ath
Arabidopsis thaliana (7 genes)
bdi
Brachypodium distachyon (13 genes)
cpa
Carica papaya (7 genes)
cre
Chlamydomonas reinhardtii (2 genes)
fve
Fragaria vesca (10 genes)
gma
Glycine max (11 genes)
lja
Lotus japonicus (8 genes)
mdo
Malus domestica (41 genes)
mes
Manihot esculenta (17 genes)
mrcc299
Micromonas sp. RCC299 (3 genes)
mtr
Medicago truncatula (3 genes)
olu
Ostreococcus lucimarinus (4 genes)
osa
Oryza sativa ssp. japonica (12 genes)
osaindica
Oryza sativa ssp. indica (17 genes)
ota
Ostreococcus tauri (3 genes)
ppa
Physcomitrella patens (6 genes)
ptr
Populus trichocarpa (27 genes)
rco
Ricinus communis (9 genes)
sbi
Sorghum bicolor (10 genes)
smo
Selaginella moellendorffii (16 genes)
tca
Theobroma cacao (16 genes)
vca
Volvox carteri (1 gene)
vvi
Vitis vinifera (12 genes)
zma
Zea mays (13 genes)



The gene family HOM000304 has 278 genes in 25 species (21 outlier genes).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
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Index of genes with 1 constraints:

Page 1 of 14, showing 20 records out of 278 total, starting on record 1, ending on 20

gene_id species description comment strand chr outlier
AL0G03360 aly name=scaffold_6000006.1;pid=920825;prot=eq;tid=952338 - scaffold_60 No
AL1G31100 aly name=fgenesh2_kg.1__3182__AT1G30100.1;pid=473228;prot=eq;tid=473228 + scaffold_1 No
AL1G52420 aly name=scaffold_105580.1;pid=892786;prot=eq;tid=924299 + scaffold_1 No
AL2G27390 aly name=scaffold_202809.1;pid=895735;prot=eq;tid=927248 - scaffold_2 No
AL3G15320 aly name=fgenesh2_kg.3__1569__AT3G14440.1;pid=478868;prot=eq;tid=478868 - scaffold_3 No
AL3G26980 aly name=scaffold_302916.1;pid=898946;prot=eq;tid=930459 - scaffold_3 No
AL5G34670 aly name=fgenesh2_kg.5__2858__AT3G63520.1;pid=486866;prot=eq;tid=486866 + scaffold_5 No
AL7G23370 aly name=scaffold_702485.1;pid=914743;prot=eq;tid=946256 - scaffold_7 No
AL7G24440 aly name=fgenesh2_kg.7__2463__AT4G18350.1;pid=493030;prot=eq;tid=493030 - scaffold_7 No
AL8G08960 aly name=fgenesh1_pg.C_scaffold_8000681;pid=356894;prot=eq;tid=356894 - scaffold_8 No
AT1G30100 ath Encodes 9-cis-epoxycarotenoid dioxygenase, a key enzyme in the biosynthesis of abscisic acid. The expression of this gene increases during the first 6h of imbibition.;nine-cis-epoxycarotenoid dioxygenase 5 transcript=eq;prot=eq; + 1 No
AT1G78390 ath Encodes 9-cis-epoxycarotenoid dioxygenase, a key enzyme in the biosynthesis of abscisic acid. The expression of this gene increases during the first 6h of imbibition.;nine-cis-epoxycarotenoid dioxygenase 9 transcript=eq;prot=eq; - 1 No
AT3G14440 ath Encodes 9-cis-epoxycarotenoid dioxygenase, a key enzyme in the biosynthesis of abscisic acid. Regulated in response to drought and salinity. Expressed in roots, flowers and seeds. Localized to the chloroplast stroma and thylakoid membrane.;nine-cis-epoxycarotenoid dioxygenase 3 transcript=eq;prot=eq; - 3 No
AT3G24220 ath A member of gene NCED-related gene family, encodes 9-cis-epoxycarotenoid dioxygenase, a key enzyme in the biosynthesis of abscisic acid. The expression of this gene declines during the first 12h of imbibition.;nine-cis-epoxycarotenoid dioxygenase 6 transcript=eq;prot=eq; + 3 No
AT3G63520 ath Encodes a protein with 9-cis-epoxycarotenoid dioxygenase activity. The enzyme was shown to act on a variety of carotenoid including β-carotene, lutein, zeaxanthin, and all-trans-violaxanthin. When those compounds are used as substrates, the major reaction product detected is a C14 dialdehyde: 4,9-dimethyldodeca-2,4,6,8,10-pentaene-1,12-dial. The enzyme did not cleave as efficiently carotenoids containing 9-cis-double or allenic bonds.;carotenoid cleavage dioxygenase 1 transcript=eq;prot=eq; + 3 No
AT4G18350 ath Encodes 9-cis-epoxycarotenoid dioxygenase, a key enzyme in the biosynthesis of abscisic acid. The expression of this gene declines during the first 12h of imbibition.;nine-cis-epoxycarotenoid dioxygenase 2 transcript=eq;prot=eq; + 4 No
AT4G19170 ath chloroplast-targeted member of a family of enzymes similar to nine-cis-epoxycarotenoid dioxygenase;nine-cis-epoxycarotenoid dioxygenase 4 transcript=eq;prot=eq; + 4 No
BD1G13760 bdi 9-cis-epoxycarotenoid dioxygenase-like pid=Bradi1g13760.1;tid=Bradi1g13760.1;GeneName=Bradi1g13760;transcript=eq;prot=eq - Bd1 No
BD1G51850 bdi 9-cis-epoxycarotenoid dioxygenase 1 pid=Bradi1g51850.1;tid=Bradi1g51850.1;GeneName=Bradi1g51850;transcript=eq;prot=eq + Bd1 No
BD1G58580 bdi 9-cis-epoxycarotenoid dioxygenase 2 pid=Bradi1g58580.1;tid=Bradi1g58580.1;GeneName=Bradi1g58580;transcript=eq;prot=eq + Bd1 No
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