Gene family  

Sub-families
ORTHO001728 (36 genes in 18 species)
ORTHO003829 (28 genes in 18 species)
ORTHO007982 (22 genes in 17 species)
View all sub-families (25)
 
Keywords


Overview of gene family content




aly
Arabidopsis lyrata (17 genes)
ath
Arabidopsis thaliana (16 genes)
bdi
Brachypodium distachyon (12 genes)
cpa
Carica papaya (12 genes)
fve
Fragaria vesca (11 genes)
gma
Glycine max (31 genes)
lja
Lotus japonicus (9 genes)
mdo
Malus domestica (22 genes)
mes
Manihot esculenta (16 genes)
mtr
Medicago truncatula (12 genes)
osa
Oryza sativa ssp. japonica (15 genes)
osaindica
Oryza sativa ssp. indica (15 genes)
ppa
Physcomitrella patens (6 genes)
ptr
Populus trichocarpa (18 genes)
rco
Ricinus communis (9 genes)
sbi
Sorghum bicolor (10 genes)
smo
Selaginella moellendorffii (3 genes)
tca
Theobroma cacao (11 genes)
vvi
Vitis vinifera (13 genes)
zma
Zea mays (20 genes)



The gene family HOM000303 has 278 genes in 20 species (10 outlier genes).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
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Index of genes with 1 constraints:

Page 1 of 14, showing 20 records out of 278 total, starting on record 1, ending on 20

gene_id species description comment strand chr outlier
AL2G00950 aly name=fgenesh2_kg.2__76__AT1G64090.1;pid=474946;prot=eq;tid=474946 - scaffold_2 No
AL2G16350 aly name=fgenesh1_pm.C_scaffold_2000873;pid=315840;prot=eq;tid=315840 + scaffold_2 No
AL3G10510 aly name=fgenesh2_kg.3__1055__AT3G10260.1;pid=478354;prot=eq;tid=478354 - scaffold_3 No
AL3G11320 aly name=Al_scaffold_0003_1105;pid=872464;prot=eq;tid=903977 - scaffold_3 No
AL3G19760 aly name=fgenesh2_kg.3__2025__AT3G18260.1;pid=479324;prot=eq;tid=479324 - scaffold_3 No
AL3G21020 aly name=Al_scaffold_0003_2054;pid=873413;prot=eq;tid=904926 + scaffold_3 No
AL3G34860 aly name=fgenesh2_kg.3__3095__AT2G15280.1;pid=480394;prot=eq;tid=480394 + scaffold_3 No
AL4G03400 aly name=fgenesh1_pg.C_scaffold_4000264;pid=343922;prot=eq;tid=343922 + scaffold_4 No
AL4G34160 aly name=scaffold_403570.1;pid=904069;prot=eq;tid=935582 + scaffold_4 No
AL5G00180 aly name=fgenesh2_kg.5__25__AT2G01240.1;pid=484033;prot=eq;tid=484033 - scaffold_5 No
AL5G24160 aly name=scaffold_502519.1;pid=906815;prot=eq;tid=938328 - scaffold_5 No
AL5G32290 aly name=fgenesh2_kg.5__2634__AT3G61560.1;pid=486642;prot=eq;tid=486642 + scaffold_5 No
AL6G33780 aly name=scaffold_603504.1;pid=911447;prot=eq;tid=942960 - scaffold_6 No
AL6G40360 aly name=fgenesh2_kg.6__3582__AT4G01230.1;pid=490448;prot=eq;tid=490448 + scaffold_6 No
AL7G18560 aly name=scaffold_701976.1;pid=914234;prot=eq;tid=945747 - scaffold_7 No
AL7G27490 aly name=scaffold_702915.1;pid=915173;prot=eq;tid=946686 + scaffold_7 Yes
AL7G36050 aly name=fgenesh2_kg.7__3261__AT5G41600.1;pid=493828;prot=eq;tid=493828 - scaffold_7 No
AT1G64090 ath Reticulan like protein B3 (RTNLB3); CONTAINS InterPro DOMAIN/s: Reticulon (InterPro:IPR003388); BEST Arabidopsis thaliana protein match is: VIRB2-interacting protein 3 (TAIR:AT5G41600.1).;Reticulan like protein B3 transcript=eq;prot=eq; + 1 No
AT1G68230 ath Reticulon family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endoplasmic reticulum; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Reticulon (InterPro:IPR003388); BEST Arabidopsis thaliana protein match is: Reticulon family protein (TAIR:AT2G46170.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).;Reticulon family protein transcript=eq;prot=eq; + 1 No
AT2G01240 ath Reticulon family protein; INVOLVED IN: biological_process unknown; LOCATED IN: endoplasmic reticulum; CONTAINS InterPro DOMAIN/s: Reticulon (InterPro:IPR003388); BEST Arabidopsis thaliana protein match is: VIRB2-interacting protein 2 (TAIR:AT4G11220.1); Has 375 Blast hits to 375 proteins in 24 species: Archae - 0; Bacteria - 0; Metazoa - 12; Fungi - 5; Plants - 358; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).;Reticulon family protein transcript=eq;prot=eq; - 2 No
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