Gene family  

Sub-families
ORTHO003155 (30 genes in 19 species)
ORTHO005259 (26 genes in 16 species)
ORTHO005411 (26 genes in 19 species)
View all sub-families (32)
 
Keywords


Overview of gene family content




aly
Arabidopsis lyrata (8 genes)
ath
Arabidopsis thaliana (8 genes)
bdi
Brachypodium distachyon (12 genes)
cpa
Carica papaya (10 genes)
cre
Chlamydomonas reinhardtii (1 gene)
fve
Fragaria vesca (12 genes)
gma
Glycine max (33 genes)
lja
Lotus japonicus (13 genes)
mdo
Malus domestica (32 genes)
mes
Manihot esculenta (17 genes)
mrcc299
Micromonas sp. RCC299 (1 gene)
mtr
Medicago truncatula (8 genes)
olu
Ostreococcus lucimarinus (1 gene)
osa
Oryza sativa ssp. japonica (15 genes)
osaindica
Oryza sativa ssp. indica (23 genes)
ota
Ostreococcus tauri (1 gene)
ppa
Physcomitrella patens (3 genes)
ptr
Populus trichocarpa (23 genes)
rco
Ricinus communis (8 genes)
sbi
Sorghum bicolor (10 genes)
smo
Selaginella moellendorffii (5 genes)
tca
Theobroma cacao (9 genes)
vca
Volvox carteri (1 gene)
vvi
Vitis vinifera (12 genes)
zma
Zea mays (16 genes)



The gene family HOM000298 has 282 genes in 25 species (11 outlier genes).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
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Index of genes with 1 constraints:

Page 1 of 15, showing 20 records out of 282 total, starting on record 1, ending on 20

gene_id species description comment strand chr outlier
AL1G25210 aly name=fgenesh2_kg.1__2553__AT1G23380.2;pid=472599;prot=eq;tid=472599 - scaffold_1 No
AL2G02380 aly name=fgenesh2_kg.2__183__AT1G62990.1;pid=475053;prot=eq;tid=475053 - scaffold_2 No
AL2G03140 aly name=fgenesh1_pg.C_scaffold_2000245;pid=338146;prot=eq;tid=338146 + scaffold_2 No
AL2G19040 aly name=fgenesh2_kg.2__1305__AT1G70510.1;pid=476175;prot=eq;tid=476175 + scaffold_2 No
AL6G10830 aly name=fgenesh2_kg.6__1072__AT5G11060.1;pid=487938;prot=eq;tid=487938 + scaffold_6 No
AL6G25290 aly name=fgenesh2_kg.6__2508__AT5G25220.1;pid=489374;prot=eq;tid=489374 + scaffold_6 No
AL6G30270 aly name=fgenesh2_kg.6__2861__AT4G08150.1;pid=489727;prot=eq;tid=489727 - scaffold_6 No
AL7G09480 aly name=fgenesh1_pm.C_scaffold_7000752;pid=328525;prot=eq;tid=328525 - scaffold_7 No
AT1G23380 ath homeodomain transcription factor KNAT6, belonging to class I of KN transcription factor family (which also includes KNAT1 and KNAT2). Expression is increased in as and bop1 leaf mutants.;KNOTTED1-like homeobox gene 6 transcript=eq;prot=eq; - 1 No
AT1G62360 ath Class I knotted-like homeodomain protein that is required for shoot apical meristem (SAM) formation during embryogenesis and for SAM function throughout the lifetime of the plant. Functions by preventing incorporation of cells in the meristem center into differentiating organ primordia.;KNOX/ELK homeobox transcription factor transcript=eq;prot=eq; - 1 No
AT1G62990 ath Encodes a homeodomain transcription factor of the Knotted family. May be involved in secondary cell wall biosynthesis. Mutants have moderately irregular xylem development. Expression of this gene is upregulated by SND1 and MYB46.;KNOTTED-like homeobox of Arabidopsis thaliana 7 transcript=eq;prot=eq; + 1 No
AT1G70510 ath A member of class I knotted1-like homeobox gene family (together with KNAT1). Similar to the knotted1 (kn1) homeobox gene of maize. KNAT2 acts synergistically with cytokinins and antagonistically with ethylene based on ectopic expression studies in different mutant backgrounds and hormone treatments. In addition, KNAT2 is negatively regulated by AS and YABBY genes. KNAT2 is strongly expressed in the shoot apex of seedlings, while in mature plants the gene is primarily expressed in flowers and inflorescence stems.;KNOTTED-like from Arabidopsis thaliana 2 transcript=eq;prot=eq; + 1 No
AT4G08150 ath A member of class I knotted1-like homeobox gene family (together with KNAT2). Similar to the knotted1 (kn1) homeobox gene of maize. Normally expressed in the peripheral and rib zone of shoot apical meristem but not in the leaf primordia. It is also expressed in the fourth floral whorl, in the region that would become style, particularly in the cell surrounding the transmitting tissue. No expression was detected in the first three floral whorls. Expression is repressed by auxin and AS1 which results in the promotion of leaf fate.;KNOTTED-like from Arabidopsis thaliana transcript=eq;prot=eq; - 4 No
AT4G32040 ath A member of Class II KN1-like homeodomain transcription factors factors (together with KNAT3 and KNAT4), with greatest homology to the maize knox1 homeobox protein. Regulates photomorphogenic responses and represses late steps in gibberellin biosynthesis. KNAT5 promoter activity showed cell-type specific pattern along longitudinal root axis, primarily in the epidermis of the distal end of primary root elongation zone.;KNOTTED1-like homeobox gene 5 transcript=eq;prot=eq; + 4 No
AT5G11060 ath A member of Class II KN1-like homeodomain transcription factors (together with KNAT3 and KNAT5), with greatest homology to the maize knox1 homeobox protein. Expression regulated by light. Detected in all tissues examined, but most prominent in leaves and young siliques. Transient expression of GFP translational fusion protein suggests bipartite localization in nucleus and cytoplasm. KNAT4 promoter activity showed cell-type specific pattern along longitudinal root axis; GUS expression pattern started at the elongation zone, predominantly in the phloem and pericycle cells, extending to endodermis toward the base of the root.;KNOTTED1-like homeobox gene 4 transcript=eq;prot=eq; + 5 No
AT5G25220 ath A member of class II knotted1-like homeobox gene family (together with KNAT4 and KNAT5). Expressed in: hypocotyl-root boundary, anther-filament junction in flowers, ovule-funiculus and peduncle-silique boundaries, petioles and root. Light-regulated expression with differential response to red/far-red light. KNAT3 promoter activity showed cell-type specific pattern along longitudinal root axis, restricted mainly to the differentiation zone of the root, namely in the cortex and pericycle. Not detected in lateral root primordia;KNOTTED1-like homeobox gene 3 transcript=eq;prot=eq; + 5 No
BD1G07247 bdi pid=Bradi1g07247.1;tid=Bradi1g07247.1;GeneName=Bradi1g07247;transcript=eq;prot=eq - Bd1 No
BD1G10047 bdi pid=Bradi1g10047.1;tid=Bradi1g10047.1;GeneName=Bradi1g10047;transcript=eq;prot=eq + Bd1 No
BD1G12677 bdi pid=Bradi1g12677.1;tid=Bradi1g12677.1;GeneName=Bradi1g12677;transcript=eq;prot=eq + Bd1 No
BD1G12690 bdi Homeobox transcription factors, subfamily Class I KNOX pid=Bradi1g12690.1;tid=Bradi1g12690.1;GeneName=Bradi1g12690;Name=BdHB4;transcript=eq;prot=eq + Bd1 No
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