Gene family  

Sub-families
ORTHO002009 (34 genes in 24 species)
ORTHO002255 (33 genes in 25 species)
ORTHO003808 (28 genes in 19 species)
View all sub-families (17)
 
Keywords


Overview of gene family content




aly
Arabidopsis lyrata (10 genes)
ath
Arabidopsis thaliana (18 genes)
bdi
Brachypodium distachyon (12 genes)
cpa
Carica papaya (13 genes)
cre
Chlamydomonas reinhardtii (3 genes)
fve
Fragaria vesca (9 genes)
gma
Glycine max (24 genes)
lja
Lotus japonicus (20 genes)
mdo
Malus domestica (14 genes)
mes
Manihot esculenta (14 genes)
mrcc299
Micromonas sp. RCC299 (3 genes)
mtr
Medicago truncatula (13 genes)
olu
Ostreococcus lucimarinus (3 genes)
osa
Oryza sativa ssp. japonica (9 genes)
osaindica
Oryza sativa ssp. indica (10 genes)
ota
Ostreococcus tauri (4 genes)
ppa
Physcomitrella patens (9 genes)
ptr
Populus trichocarpa (25 genes)
rco
Ricinus communis (13 genes)
sbi
Sorghum bicolor (11 genes)
smo
Selaginella moellendorffii (6 genes)
tca
Theobroma cacao (15 genes)
vca
Volvox carteri (2 genes)
vvi
Vitis vinifera (15 genes)
zma
Zea mays (13 genes)



The gene family HOM000288 has 288 genes in 25 species (46 outlier genes).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
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Index of genes with 1 constraints:

Page 1 of 15, showing 20 records out of 288 total, starting on record 1, ending on 20

gene_id species description comment strand chr outlier
AL1G03980 aly name=scaffold_100422.1;pid=887628;prot=eq;tid=919141 - scaffold_1 No
AL2G08810 aly name=fgenesh2_kg.2__618__AT1G64890.1;pid=475488;prot=eq;tid=475488 + scaffold_2 No
AL2G28810 aly name=fgenesh2_kg.2__2277__AT1G79710.1;pid=477147;prot=eq;tid=477147 + scaffold_2 No
AL4G17070 aly name=fgenesh2_kg.4__1193__AT2G32040.1;pid=482133;prot=eq;tid=482133 + scaffold_4 No
AL4G18500 aly name=fgenesh1_pm.C_scaffold_4001114;pid=321057;prot=eq;tid=321057 + scaffold_4 No
AL6G10550 aly name=fgenesh1_pm.C_scaffold_6000838;pid=325618;prot=eq;tid=325618 - scaffold_6 Yes
AL6G10570 aly name=fgenesh2_kg.6__1049__AT5G10820.1;pid=487915;prot=eq;tid=487915 - scaffold_6 No
AL6G25110 aly name=fgenesh2_kg.6__2494__AT5G25050.1;pid=489360;prot=eq;tid=489360 + scaffold_6 No
AL6G25120 aly name=scaffold_602605.1;pid=910548;prot=eq;tid=942061 - scaffold_6 Yes
AL8G20190 aly name=fgenesh2_kg.8__1384__AT5G54860.1;pid=495568;prot=eq;tid=495568 + scaffold_8 No
AT1G04570 ath Major facilitator superfamily protein; FUNCTIONS IN: transporter activity; INVOLVED IN: transport; LOCATED IN: chloroplast, membrane; CONTAINS InterPro DOMAIN/s: Biopterin transport-related protein BT1 (InterPro:IPR004324), Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); BEST Arabidopsis thaliana protein match is: Major facilitator superfamily protein (TAIR:AT2G33280.1); Has 816 Blast hits to 814 proteins in 271 species: Archae - 6; Bacteria - 387; Metazoa - 0; Fungi - 18; Plants - 232; Viruses - 0; Other Eukaryotes - 173 (source: NCBI BLink).;Major facilitator superfamily protein transcript=eq;prot=eq; - 1 No
AT1G64890 ath Major facilitator superfamily protein; CONTAINS InterPro DOMAIN/s: Major facilitator superfamily, general substrate transporter (InterPro:IPR016196), Biopterin transport-related protein BT1 (InterPro:IPR004324); BEST Arabidopsis thaliana protein match is: Major facilitator superfamily protein (TAIR:AT1G04570.1); Has 1088 Blast hits to 1079 proteins in 365 species: Archae - 17; Bacteria - 560; Metazoa - 42; Fungi - 5; Plants - 247; Viruses - 0; Other Eukaryotes - 217 (source: NCBI BLink).;Major facilitator superfamily protein transcript=eq;prot=eq; + 1 No
AT1G79710 ath Major facilitator superfamily protein; CONTAINS InterPro DOMAIN/s: Major facilitator superfamily, general substrate transporter (InterPro:IPR016196), Biopterin transport-related protein BT1 (InterPro:IPR004324); BEST Arabidopsis thaliana protein match is: Major facilitator superfamily protein (TAIR:AT5G25050.1); Has 1010 Blast hits to 995 proteins in 167 species: Archae - 4; Bacteria - 188; Metazoa - 0; Fungi - 6; Plants - 265; Viruses - 0; Other Eukaryotes - 547 (source: NCBI BLink).;Major facilitator superfamily protein transcript=eq;prot=eq; + 1 No
AT2G19220 ath unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G11290.1); Has 443 Blast hits to 267 proteins in 21 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 17; Plants - 426; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). transcript=eq;prot=eq; - 2 No
AT2G24960 ath unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G02210.2); Has 1453 Blast hits to 509 proteins in 26 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 39; Plants - 1363; Viruses - 0; Other Eukaryotes - 50 (source: NCBI BLink). transcript=eq;prot=eq; + 2 No
AT2G32040 ath The At2g32040 gene product has been demonstrated to mediate folate monoglutamate transport involved in tetrahydrofolate biosynthesis. It also mediates transport of antifolates, such as methotrexate and aminopterin. The gene is expressed in both chloroplast and non-green plastids.;Major facilitator superfamily protein transcript=eq;prot=eq; + 2 No
AT2G33280 ath Major facilitator superfamily protein; FUNCTIONS IN: transporter activity; INVOLVED IN: transport; LOCATED IN: endomembrane system, membrane; CONTAINS InterPro DOMAIN/s: Major facilitator superfamily, general substrate transporter (InterPro:IPR016196), Biopterin transport-related protein BT1 (InterPro:IPR004324); BEST Arabidopsis thaliana protein match is: Major facilitator superfamily protein (TAIR:AT1G04570.1); Has 566 Blast hits to 559 proteins in 121 species: Archae - 4; Bacteria - 103; Metazoa - 0; Fungi - 7; Plants - 244; Viruses - 0; Other Eukaryotes - 208 (source: NCBI BLink).;Major facilitator superfamily protein transcript=eq;prot=eq; + 2 No
AT3G11290 ath unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G11310.1); Has 720 Blast hits to 435 proteins in 28 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 32; Plants - 682; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink). transcript=eq;prot=eq; - 3 No
AT3G11300 ath unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G11290.1); Has 89 Blast hits to 89 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 89; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). transcript=eq;prot=eq; - 3 Yes
AT3G11310 ath unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G11290.1); Has 575 Blast hits to 342 proteins in 22 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 10; Plants - 559; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink). transcript=eq;prot=eq; - 3 No
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