Gene family  

Sub-families
ORTHO000807 (47 genes in 8 species)
ORTHO008392 (21 genes in 7 species)
ORTHO012166 (16 genes in 5 species)
View all sub-families (34)
 
Keywords


Overview of gene family content




aly
Arabidopsis lyrata (13 genes)
ath
Arabidopsis thaliana (3 genes)
bdi
Brachypodium distachyon (25 genes)
fve
Fragaria vesca (19 genes)
gma
Glycine max (5 genes)
lja
Lotus japonicus (27 genes)
mdo
Malus domestica (17 genes)
mtr
Medicago truncatula (68 genes)
osa
Oryza sativa ssp. japonica (1 gene)
osaindica
Oryza sativa ssp. indica (75 genes)
ota
Ostreococcus tauri (1 gene)
ptr
Populus trichocarpa (10 genes)
rco
Ricinus communis (1 gene)
sbi
Sorghum bicolor (25 genes)
zma
Zea mays (3 genes)



The gene family HOM000280 has 293 genes in 15 species (71 outlier genes).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
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Index of genes with 1 constraints:

Page 1 of 15, showing 20 records out of 293 total, starting on record 1, ending on 20

gene_id species description comment strand chr outlier
AL1G22200 aly name=fgenesh2_kg.1__2289__AT2G06550.1;pid=472335;prot=eq;tid=472335 - scaffold_1 No
AL1G48460 aly name=fgenesh2_kg.1__4417__AT2G06550.1;pid=474463;prot=eq;tid=474463 + scaffold_1 No
AL3G31620 aly name=Al_scaffold_0003_3061;pid=874420;prot=eq;tid=905933 - scaffold_3 Yes
AL3G35250 aly name=scaffold_303748.1;pid=899778;prot=eq;tid=931291 - scaffold_3 Yes
AL3G35260 aly name=scaffold_303749.1;pid=899779;prot=eq;tid=931292 + scaffold_3 No
AL4G09690 aly name=scaffold_400975.1;pid=901474;prot=eq;tid=932987 - scaffold_4 Yes
AL4G13030 aly name=fgenesh2_kg.4__835__AT2G06550.1;pid=481775;prot=eq;tid=481775 + scaffold_4 No
AL5G18090 aly name=fgenesh2_kg.5__1255__AT2G06550.1;pid=485263;prot=eq;tid=485263 + scaffold_5 No
AL6G17900 aly name=fgenesh2_kg.6__1794__AT2G06550.1;pid=488660;prot=eq;tid=488660 + scaffold_6 No
AL7G31600 aly name=fgenesh2_kg.7__2996__AT2G06550.1;pid=493563;prot=eq;tid=493563 + scaffold_7 No
AL7G40710 aly name=fgenesh2_kg.7__3600__AT2G06550.1;pid=494167;prot=eq;tid=494167 - scaffold_7 No
AL8G08660 aly name=scaffold_800896.1;pid=917496;prot=eq;tid=949009 + scaffold_8 No
AL8G09180 aly name=scaffold_800939.1;pid=917539;prot=eq;tid=949052 - scaffold_8 Yes
AT1G36675 ath glycine-rich protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G10975.1); Has 1842 Blast hits to 1279 proteins in 240 species: Archae - 9; Bacteria - 267; Metazoa - 613; Fungi - 226; Plants - 409; Viruses - 32; Other Eukaryotes - 286 (source: NCBI BLink).;glycine-rich protein transcript=eq;prot=eq; + 1 Yes
AT2G10975 ath unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). transcript=eq;prot=eq; + 2 Yes
AT2G13770 ath CONTAINS InterPro DOMAIN/s: Putative harbinger transposase-derived nuclease (InterPro:IPR006912); Has 451 Blast hits to 352 proteins in 33 species: Archae - 0; Bacteria - 0; Metazoa - 28; Fungi - 8; Plants - 388; Viruses - 0; Other Eukaryotes - 27 (source: NCBI BLink). transcript=eq;prot=eq; + 2 No
BD1G12267 bdi pid=Bradi1g12267.1;tid=Bradi1g12267.1;GeneName=Bradi1g12267;transcript=eq;prot=eq + Bd1 No
BD1G19075 bdi pid=Bradi1g19075.1;tid=Bradi1g19075.1;GeneName=Bradi1g19075;transcript=eq;prot=eq - Bd1 No
BD1G25296 bdi pid=Bradi1g25296.1;tid=Bradi1g25296.1;GeneName=Bradi1g25296;transcript=eq;prot=eq + Bd1 No
BD1G37686 bdi pid=Bradi1g37686.1;tid=Bradi1g37686.1;GeneName=Bradi1g37686;transcript=eq;prot=eq - Bd1 No
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