Gene family  

Sub-families
ORTHO002207 (33 genes in 19 species)
ORTHO003277 (29 genes in 20 species)
ORTHO005281 (26 genes in 18 species)
View all sub-families (32)
 
Keywords


Overview of gene family content




aly
Arabidopsis lyrata (14 genes)
ath
Arabidopsis thaliana (13 genes)
bdi
Brachypodium distachyon (14 genes)
cpa
Carica papaya (9 genes)
cre
Chlamydomonas reinhardtii (2 genes)
fve
Fragaria vesca (8 genes)
gma
Glycine max (25 genes)
lja
Lotus japonicus (13 genes)
mdo
Malus domestica (33 genes)
mes
Manihot esculenta (18 genes)
mtr
Medicago truncatula (10 genes)
olu
Ostreococcus lucimarinus (1 gene)
osa
Oryza sativa ssp. japonica (15 genes)
osaindica
Oryza sativa ssp. indica (16 genes)
ppa
Physcomitrella patens (12 genes)
ptr
Populus trichocarpa (17 genes)
rco
Ricinus communis (10 genes)
sbi
Sorghum bicolor (16 genes)
smo
Selaginella moellendorffii (3 genes)
tca
Theobroma cacao (12 genes)
vca
Volvox carteri (2 genes)
vvi
Vitis vinifera (8 genes)
zma
Zea mays (24 genes)



The gene family HOM000279 has 295 genes in 23 species (28 outlier genes).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
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Index of genes with 1 constraints:

Page 1 of 15, showing 20 records out of 295 total, starting on record 1, ending on 20

gene_id species description comment strand chr outlier
AL1G05580 aly name=scaffold_100594.1;pid=887800;prot=eq;tid=919313 - scaffold_1 No
AL1G06390 aly name=Al_scaffold_0001_623;pid=878856;prot=eq;tid=910369 + scaffold_1 No
AL1G38910 aly name=fgenesh2_kg.1__3729__AT1G43700.1;pid=473775;prot=eq;tid=473775 + scaffold_1 No
AL1G47730 aly name=scaffold_105081.1;pid=892287;prot=eq;tid=923800 + scaffold_1 Yes
AL3G13450 aly name=scaffold_301481.1;pid=897511;prot=eq;tid=929024 + scaffold_3 Yes
AL3G33030 aly name=fgenesh1_pg.C_scaffold_3002758;pid=342995;prot=eq;tid=342995 + scaffold_3 No
AL3G33070 aly name=scaffold_303530.1;pid=899560;prot=eq;tid=931073 + scaffold_3 No
AL4G00360 aly name=fgenesh2_kg.4__38__AT2G21230.1;pid=480978;prot=eq;tid=480978 - scaffold_4 No
AL4G16280 aly name=fgenesh2_kg.4__1126__AT2G31370.4;pid=482066;prot=eq;tid=482066 + scaffold_4 No
AL4G27530 aly name=fgenesh2_kg.4__2179__AT2G40620.1;pid=483119;prot=eq;tid=483119 - scaffold_4 No
AL4G29630 aly name=fgenesh2_kg.4__2390__AT2G42380.2;pid=483330;prot=eq;tid=483330 - scaffold_4 No
AL5G28650 aly name=fgenesh2_kg.5__2254__AT3G58120.1;pid=486262;prot=eq;tid=486262 - scaffold_5 No
AL6G06870 aly name=fgenesh2_kg.6__672__AT5G07160.1;pid=487538;prot=eq;tid=487538 - scaffold_6 No
AL7G00780 aly name=Al_scaffold_0007_76;pid=856577;prot=eq;tid=888090 - scaffold_7 No
AT1G06070 ath Basic-leucine zipper (bZIP) transcription factor family protein; FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Basic-leucine zipper (bZIP) transcription factor (InterPro:IPR004827), bZIP transcription factor, bZIP-1 (InterPro:IPR011616); BEST Arabidopsis thaliana protein match is: Basic-leucine zipper (bZIP) transcription factor family protein (TAIR:AT2G31370.5); Has 39307 Blast hits to 17494 proteins in 873 species: Archae - 8; Bacteria - 1528; Metazoa - 14762; Fungi - 4294; Plants - 2852; Viruses - 384; Other Eukaryotes - 15479 (source: NCBI BLink).;Basic-leucine zipper (bZIP) transcription factor family protein transcript=eq;prot=eq; - 1 No
AT1G06850 ath basic leucine-zipper 52 (bZIP52); FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Basic-leucine zipper (bZIP) transcription factor (InterPro:IPR004827), bZIP transcription factor, bZIP-1 (InterPro:IPR011616); BEST Arabidopsis thaliana protein match is: Basic-leucine zipper (bZIP) transcription factor family protein (TAIR:AT2G40620.1); Has 1688 Blast hits to 1688 proteins in 185 species: Archae - 0; Bacteria - 22; Metazoa - 232; Fungi - 142; Plants - 1216; Viruses - 2; Other Eukaryotes - 74 (source: NCBI BLink).;basic leucine-zipper 52 transcript=eq;prot=eq; + 1 No
AT1G43700 ath Encodes a VirE2-interacting protein. VIP1 mediates nuclear translocation of VirE2 via its amino half, and interacts with histone H2A via it carboxyl half.;VIRE2-interacting protein 1 transcript=eq;prot=eq; + 1 No
AT2G12900 ath Basic-leucine zipper (bZIP) transcription factor family protein; FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus, chloroplast; CONTAINS InterPro DOMAIN/s: Basic-leucine zipper (bZIP) transcription factor (InterPro:IPR004827), Basic leucine zipper (InterPro:IPR011700); BEST Arabidopsis thaliana protein match is: Basic-leucine zipper (bZIP) transcription factor family protein (TAIR:AT2G12940.1); Has 1373 Blast hits to 1364 proteins in 175 species: Archae - 2; Bacteria - 73; Metazoa - 486; Fungi - 39; Plants - 637; Viruses - 0; Other Eukaryotes - 136 (source: NCBI BLink).;Basic-leucine zipper (bZIP) transcription factor family protein transcript=eq;prot=eq; + 2 No
AT2G12940 ath unfertilized embryo sac 4 (UNE4); FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; INVOLVED IN: double fertilization forming a zygote and endosperm; LOCATED IN: nucleus, chloroplast; CONTAINS InterPro DOMAIN/s: Basic-leucine zipper (bZIP) transcription factor (InterPro:IPR004827), Basic leucine zipper (InterPro:IPR011700); BEST Arabidopsis thaliana protein match is: Basic-leucine zipper (bZIP) transcription factor family protein (TAIR:AT2G13150.1); Has 1144 Blast hits to 1139 proteins in 129 species: Archae - 0; Bacteria - 2; Metazoa - 510; Fungi - 17; Plants - 518; Viruses - 0; Other Eukaryotes - 97 (source: NCBI BLink).;Basic-leucine zipper (bZIP) transcription factor family protein transcript=eq;prot=eq; + 2 No
AT2G13150 ath Basic-leucine zipper (bZIP) transcription factor family protein; FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus, chloroplast; CONTAINS InterPro DOMAIN/s: Basic-leucine zipper (bZIP) transcription factor (InterPro:IPR004827), Basic leucine zipper (InterPro:IPR011700); BEST Arabidopsis thaliana protein match is: Basic-leucine zipper (bZIP) transcription factor family protein (TAIR:AT2G12940.1); Has 1035 Blast hits to 1035 proteins in 116 species: Archae - 3; Bacteria - 11; Metazoa - 293; Fungi - 24; Plants - 643; Viruses - 0; Other Eukaryotes - 61 (source: NCBI BLink).;Basic-leucine zipper (bZIP) transcription factor family protein transcript=eq;prot=eq; + 2 No
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