Gene family  

Sub-families
ORTHO000326 (67 genes in 20 species)
ORTHO004930 (26 genes in 18 species)
ORTHO006535 (24 genes in 16 species)
View all sub-families (21)
 
Keywords


Overview of gene family content




aly
Arabidopsis lyrata (13 genes)
ath
Arabidopsis thaliana (11 genes)
bdi
Brachypodium distachyon (19 genes)
cpa
Carica papaya (10 genes)
cre
Chlamydomonas reinhardtii (3 genes)
fve
Fragaria vesca (10 genes)
gma
Glycine max (34 genes)
lja
Lotus japonicus (10 genes)
mdo
Malus domestica (1 gene)
mes
Manihot esculenta (16 genes)
mrcc299
Micromonas sp. RCC299 (3 genes)
mtr
Medicago truncatula (18 genes)
olu
Ostreococcus lucimarinus (1 gene)
osa
Oryza sativa ssp. japonica (17 genes)
osaindica
Oryza sativa ssp. indica (16 genes)
ota
Ostreococcus tauri (1 gene)
ppa
Physcomitrella patens (10 genes)
ptr
Populus trichocarpa (20 genes)
rco
Ricinus communis (11 genes)
sbi
Sorghum bicolor (17 genes)
smo
Selaginella moellendorffii (6 genes)
tca
Theobroma cacao (10 genes)
vca
Volvox carteri (4 genes)
vvi
Vitis vinifera (11 genes)
zma
Zea mays (27 genes)



The gene family HOM000275 has 299 genes in 25 species (10 outlier genes).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
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Index of genes with 1 constraints:

Page 1 of 15, showing 20 records out of 299 total, starting on record 1, ending on 20

gene_id species description comment strand chr outlier
AL1G04980 aly name=fgenesh1_pg.C_scaffold_1000431;pid=333866;prot=eq;tid=333866 - scaffold_1 No
AL1G35490 aly name=fgenesh2_kg.1__3518__AT1G34120.2;pid=473564;prot=eq;tid=473564 + scaffold_1 No
AL1G40780 aly name=scaffold_104330.1;pid=891536;prot=eq;tid=923049 - scaffold_1 No
AL2G20410 aly name=fgenesh1_pm.C_scaffold_2001172;pid=316139;prot=eq;tid=316139 - scaffold_2 No
AL4G17010 aly name=fgenesh2_kg.4__1191__AT2G32010.1;pid=482131;prot=eq;tid=482131 + scaffold_4 No
AL4G23150 aly name=fgenesh2_kg.4__1797__AT2G37440.1;pid=482737;prot=eq;tid=482737 + scaffold_4 No
AL5G00970 aly name=fgenesh2_kg.5__100__AT2G01900.1;pid=484108;prot=eq;tid=484108 + scaffold_5 No
AL5G34390 aly name=fgenesh2_kg.5__2819__AT3G63240.1;pid=486827;prot=eq;tid=486827 - scaffold_5 No
AL6G04400 aly name=Al_scaffold_0006_412;pid=860903;prot=eq;tid=892416 - scaffold_6 No
AL6G31850 aly name=fgenesh1_pg.C_scaffold_6002637;pid=352044;prot=eq;tid=352044 - scaffold_6 No
AL7G24830 aly name=scaffold_702635.1;pid=914893;prot=eq;tid=946406 + scaffold_7 No
AL7G24890 aly name=scaffold_702641.1;pid=914899;prot=eq;tid=946412 + scaffold_7 Yes
AL8G31850 aly name=fgenesh1_pm.C_scaffold_8002068;pid=332725;prot=eq;tid=332725 + scaffold_8 No
AT1G05470 ath Encodes an inositol polyphosphate 5' phosphatase (5PTase) that is required for the proper recruitment of cells into developing vascular tissue in leaves and cotyledons. It is most similar to Type I 5PTases that are known to cleave a phosphate from IP3 or IP4. cvp2 mutants have elevated levels of IP3 and are hypersensitive to ABA in seed germination assays.;DNAse I-like superfamily protein transcript=eq;prot=eq; - 1 No
AT1G34120 ath Encodes an inositol polyphosphate 5-phosphatase that appears to have Type I activity. It can dephosphorylate IP3(inositol(1,4,5)P3) and IP4 (inositol(1,3,4,5)P4), but it does not act on I(1)P, I(1,4)P2, or phosphatidylinositol(4,5)P2.;inositol polyphosphate 5-phosphatase I transcript=eq;prot=eq; + 1 No
AT1G47510 ath Encodes a phosphatidylinositol polyphosphate 5-phosphatase. It can dephosphorylate PI(4,5)P2, PI(3,5)P2, and PI(3,4,5)P3, but, it is not active against PI(5)P or the water soluble inositol(1,4,5)P3 or inositol(1,3,4,5)P4. The transcript levels for this gene rise in response to auxin, ABA, and JA.;inositol polyphosphate 5-phosphatase 11 transcript=eq;prot=eq; - 1 No
AT1G71710 ath DNAse I-like superfamily protein; FUNCTIONS IN: inositol-polyphosphate 5-phosphatase activity, inositol or phosphatidylinositol phosphatase activity; INVOLVED IN: biological_process unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Inositol polyphosphate related phosphatase (InterPro:IPR000300), Endonuclease/exonuclease/phosphatase (InterPro:IPR005135); BEST Arabidopsis thaliana protein match is: inositol polyphosphate 5-phosphatase I (TAIR:AT1G34120.1); Has 2765 Blast hits to 2076 proteins in 226 species: Archae - 0; Bacteria - 0; Metazoa - 958; Fungi - 685; Plants - 795; Viruses - 3; Other Eukaryotes - 324 (source: NCBI BLink).;DNAse I-like superfamily protein transcript=eq;prot=eq; - 1 No
AT2G01900 ath DNAse I-like superfamily protein; FUNCTIONS IN: hydrolase activity, inositol or phosphatidylinositol phosphatase activity; INVOLVED IN: biological_process unknown; EXPRESSED IN: hypocotyl, sepal, root; EXPRESSED DURING: 4 anthesis; CONTAINS InterPro DOMAIN/s: Inositol polyphosphate related phosphatase (InterPro:IPR000300), Endonuclease/exonuclease/phosphatase (InterPro:IPR005135); BEST Arabidopsis thaliana protein match is: DNAse I-like superfamily protein (TAIR:AT2G37440.1); Has 2320 Blast hits to 2027 proteins in 223 species: Archae - 0; Bacteria - 0; Metazoa - 735; Fungi - 544; Plants - 769; Viruses - 0; Other Eukaryotes - 272 (source: NCBI BLink).;DNAse I-like superfamily protein transcript=eq;prot=eq; + 2 No
AT2G32010 ath Encodes an inositol polyphosphate 5’-phosphatase (5PTase). Mediating phosphoinositide signaling. Involved in establishment of foliar vein patterns.;CVP2 like 1 transcript=eq;prot=eq; + 2 No
AT2G37440 ath DNAse I-like superfamily protein; FUNCTIONS IN: hydrolase activity, inositol or phosphatidylinositol phosphatase activity; INVOLVED IN: biological_process unknown; EXPRESSED IN: sperm cell, root; CONTAINS InterPro DOMAIN/s: Inositol polyphosphate related phosphatase (InterPro:IPR000300), Endonuclease/exonuclease/phosphatase (InterPro:IPR005135); BEST Arabidopsis thaliana protein match is: DNAse I-like superfamily protein (TAIR:AT2G01900.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).;DNAse I-like superfamily protein transcript=eq;prot=eq; + 2 No
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