Gene family  

Sub-families
ORTHO003330 (29 genes in 25 species)
ORTHO003857 (28 genes in 23 species)
ORTHO003862 (28 genes in 23 species)
View all sub-families (15)
 
Keywords


Overview of gene family content




aly
Arabidopsis lyrata (10 genes)
ath
Arabidopsis thaliana (9 genes)
bdi
Brachypodium distachyon (13 genes)
cpa
Carica papaya (11 genes)
cre
Chlamydomonas reinhardtii (9 genes)
fve
Fragaria vesca (10 genes)
gma
Glycine max (16 genes)
lja
Lotus japonicus (19 genes)
mdo
Malus domestica (26 genes)
mes
Manihot esculenta (10 genes)
mrcc299
Micromonas sp. RCC299 (8 genes)
mtr
Medicago truncatula (11 genes)
olu
Ostreococcus lucimarinus (11 genes)
osa
Oryza sativa ssp. japonica (11 genes)
osaindica
Oryza sativa ssp. indica (12 genes)
ota
Ostreococcus tauri (11 genes)
ppa
Physcomitrella patens (10 genes)
ptr
Populus trichocarpa (14 genes)
rco
Ricinus communis (9 genes)
sbi
Sorghum bicolor (13 genes)
smo
Selaginella moellendorffii (13 genes)
tca
Theobroma cacao (9 genes)
vca
Volvox carteri (9 genes)
vvi
Vitis vinifera (13 genes)
zma
Zea mays (14 genes)



The gene family HOM000274 has 301 genes in 25 species (61 outlier genes).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
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Index of genes with 1 constraints:

Page 1 of 16, showing 20 records out of 301 total, starting on record 1, ending on 20

gene_id species description comment strand chr outlier
AL1G39640 aly name=scaffold_104214.1;pid=891420;prot=eq;tid=922933 + scaffold_1 No
AL3G09850 aly name=fgenesh1_pm.C_scaffold_3000784;pid=317768;prot=eq;tid=317768 - scaffold_3 No
AL3G32130 aly name=fgenesh2_kg.3__2940__AT2G22650.1;pid=480239;prot=eq;tid=480239 - scaffold_3 Yes
AL3G32140 aly name=fgenesh2_kg.3__2941__AT2G07690.1;pid=480240;prot=eq;tid=480240 - scaffold_3 No
AL3G33630 aly name=fgenesh1_pm.C_scaffold_3002454;pid=319438;prot=eq;tid=319438 + scaffold_3 No
AL3G40450 aly name=Al_scaffold_0003_3902;pid=875261;prot=eq;tid=906774 - scaffold_3 No
AL6G39430 aly name=fgenesh2_kg.6__3509__AT4G02060.1;pid=490375;prot=eq;tid=490375 - scaffold_6 No
AL8G02000 aly name=fgenesh2_kg.8__161__AT5G46280.1;pid=494345;prot=eq;tid=494345 + scaffold_8 No
AL8G04830 aly name=scaffold_800523.1;pid=917123;prot=eq;tid=948636 + scaffold_8 No
AL8G06660 aly name=scaffold_800705.1;pid=917305;prot=eq;tid=948818 - scaffold_8 Yes
AT1G44900 ath Encodes MCM2 (MINICHROMOSOME MAINTENANCE 2), a protein essential to embryo development. Overexpression results in altered root meristem function.;minichromosome maintenance (MCM2/3/5) family protein transcript=eq;prot=eq; + 1 No
AT2G07690 ath Member of the minichromosome maintenance complex, involved in DNA replication initiation. Abundant in proliferating and endocycling tissues. Localized in the nucleus during G1, S and G2 phases of the cell cycle, and are released into the cytoplasmic compartment during mitosis. Binds chromatin.;Minichromosome maintenance (MCM2/3/5) family protein transcript=eq;prot=eq; - 2 No
AT2G14050 ath minichromosome maintenance 9 (MCM9); FUNCTIONS IN: nucleoside-triphosphatase activity, DNA-dependent ATPase activity, DNA binding, nucleotide binding, ATP binding; INVOLVED IN: DNA-dependent DNA replication initiation, DNA replication; LOCATED IN: cellular_component unknown; EXPRESSED IN: sperm cell, male gametophyte, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; CONTAINS InterPro DOMAIN/s: Nucleic acid-binding, OB-fold (InterPro:IPR012340), Nucleic acid-binding, OB-fold-like (InterPro:IPR016027), ATPase, AAA+ type, core (InterPro:IPR003593), DNA-dependent ATPase MCM (InterPro:IPR001208); BEST Arabidopsis thaliana protein match is: minichromosome maintenance (MCM2/3/5) family protein (TAIR:AT1G44900.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).;minichromosome maintenance 9 transcript=eq;prot=eq; + 2 No
AT2G16440 ath MINICHROMOSOME MAINTENANCE 4 (MCM4); FUNCTIONS IN: nucleoside-triphosphatase activity, DNA-dependent ATPase activity, DNA binding, nucleotide binding, ATP binding; INVOLVED IN: cell proliferation, DNA-dependent DNA replication initiation, DNA unwinding involved in replication; LOCATED IN: nuclear chromatin; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: Nucleic acid-binding, OB-fold-like (InterPro:IPR016027), Nucleic acid-binding, OB-fold (InterPro:IPR012340), ATPase, AAA+ type, core (InterPro:IPR003593), DNA-dependent ATPase MCM (InterPro:IPR001208), DNA-dependent ATPase MCM, conserved site (InterPro:IPR018525), MCM protein 4 (InterPro:IPR008047); BEST Arabidopsis thaliana protein match is: minichromosome maintenance (MCM2/3/5) family protein (TAIR:AT5G44635.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).;Minichromosome maintenance (MCM2/3/5) family protein transcript=eq;prot=eq; - 2 No
AT2G22650 ath FAD-dependent oxidoreductase family protein; FUNCTIONS IN: oxidoreductase activity; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: FAD dependent oxidoreductase (InterPro:IPR006076); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).;FAD-dependent oxidoreductase family protein transcript=eq;prot=eq; - 2 Yes
AT3G09660 ath minichromosome maintenance 8 (MCM8); FUNCTIONS IN: nucleoside-triphosphatase activity, DNA-dependent ATPase activity, DNA binding, nucleotide binding, ATP binding; INVOLVED IN: DNA-dependent DNA replication initiation, DNA replication; LOCATED IN: cellular_component unknown; EXPRESSED IN: shoot apex, embryo, flower, seed; EXPRESSED DURING: F mature embryo stage, petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: Nucleic acid-binding, OB-fold-like (InterPro:IPR016027), Nucleic acid-binding, OB-fold (InterPro:IPR012340), ATPase, AAA+ type, core (InterPro:IPR003593), DNA-dependent ATPase MCM (InterPro:IPR001208); BEST Arabidopsis thaliana protein match is: Minichromosome maintenance (MCM2/3/5) family protein (TAIR:AT2G16440.1); Has 4027 Blast hits to 3851 proteins in 539 species: Archae - 371; Bacteria - 134; Metazoa - 1249; Fungi - 930; Plants - 423; Viruses - 3; Other Eukaryotes - 917 (source: NCBI BLink).;minichromosome maintenance 8 transcript=eq;prot=eq; - 3 No
AT4G02060 ath Member of the minichromosome maintenance complex, involved in DNA replication initiation. Abundant in proliferating and endocycling tissues. Localized in the nucleus during G1, S and G2 phases of the cell cycle, and are released into the cytoplasmic compartment during mitosis. Binds chromatin.;Minichromosome maintenance (MCM2/3/5) family protein transcript=eq;prot=eq; + 4 No
AT5G44635 ath MINICHROMOSOME MAINTENANCE 6 (MCM6); FUNCTIONS IN: DNA-dependent ATPase activity, DNA binding, ATP binding; INVOLVED IN: cell proliferation, DNA-dependent DNA replication initiation, DNA unwinding involved in replication; LOCATED IN: nuclear chromatin; EXPRESSED IN: shoot apex; EXPRESSED DURING: IL.00 inflorescence just visible; CONTAINS InterPro DOMAIN/s: Nucleic acid-binding, OB-fold-like (InterPro:IPR016027), Nucleic acid-binding, OB-fold (InterPro:IPR012340), DNA-dependent ATPase MCM (InterPro:IPR001208), DNA-dependent ATPase MCM, conserved site (InterPro:IPR018525), MCM protein 6 (InterPro:IPR008049); BEST Arabidopsis thaliana protein match is: Minichromosome maintenance (MCM2/3/5) family protein (TAIR:AT2G16440.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).;minichromosome maintenance (MCM2/3/5) family protein transcript=eq;prot=eq; - 5 No
AT5G46280 ath MINICHROMOSOME MAINTENANCE 3 (MCM3); FUNCTIONS IN: nucleoside-triphosphatase activity, DNA-dependent ATPase activity, DNA binding, nucleotide binding, ATP binding; INVOLVED IN: cell proliferation, DNA-dependent DNA replication initiation, DNA unwinding involved in replication; LOCATED IN: nuclear chromatin; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: Nucleic acid-binding, OB-fold-like (InterPro:IPR016027), Nucleic acid-binding, OB-fold (InterPro:IPR012340), ATPase, AAA+ type, core (InterPro:IPR003593), DNA-dependent ATPase MCM (InterPro:IPR001208), DNA-dependent ATPase MCM, conserved site (InterPro:IPR018525), MCM protein 3 (InterPro:IPR008046); BEST Arabidopsis thaliana protein match is: Minichromosome maintenance (MCM2/3/5) family protein (TAIR:AT4G02060.2); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).;Minichromosome maintenance (MCM2/3/5) family protein transcript=eq;prot=eq; - 5 No
BD1G45690 bdi ATP-dependent 3'-5' DNA helicase activity (Blast2GO) pid=Bradi1g45690.1;tid=Bradi1g45690.1;GeneName=Bradi1g45690;transcript=eq;prot=eq + Bd1 No
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