Gene family  

Sub-families
ORTHO001448 (38 genes in 19 species)
ORTHO001855 (35 genes in 14 species)
ORTHO004207 (27 genes in 18 species)
View all sub-families (31)
 
Keywords


Overview of gene family content




aly
Arabidopsis lyrata (15 genes)
ath
Arabidopsis thaliana (14 genes)
bdi
Brachypodium distachyon (13 genes)
cpa
Carica papaya (7 genes)
fve
Fragaria vesca (9 genes)
gma
Glycine max (16 genes)
lja
Lotus japonicus (7 genes)
mdo
Malus domestica (27 genes)
mes
Manihot esculenta (19 genes)
mtr
Medicago truncatula (9 genes)
osa
Oryza sativa ssp. japonica (18 genes)
osaindica
Oryza sativa ssp. indica (19 genes)
ppa
Physcomitrella patens (15 genes)
ptr
Populus trichocarpa (23 genes)
rco
Ricinus communis (9 genes)
sbi
Sorghum bicolor (18 genes)
smo
Selaginella moellendorffii (23 genes)
tca
Theobroma cacao (11 genes)
vvi
Vitis vinifera (15 genes)
zma
Zea mays (19 genes)



The gene family HOM000272 has 306 genes in 20 species (23 outlier genes).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
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Index of genes with 1 constraints:

Page 1 of 16, showing 20 records out of 306 total, starting on record 1, ending on 20

gene_id species description comment strand chr outlier
AL1G01560 aly name=scaffold_100169.1;pid=887375;prot=eq;tid=918888 - scaffold_1 No
AL1G05370 aly name=fgenesh2_kg.1__550__AT1G05850.1;pid=470596;prot=eq;tid=470596 - scaffold_1 No
AL3G12920 aly name=fgenesh1_pm.C_scaffold_3001035;pid=318019;prot=eq;tid=318019 - scaffold_3 No
AL3G18180 aly name=fgenesh1_pm.C_scaffold_3001473;pid=318457;prot=eq;tid=318457 - scaffold_3 No
AL4G31080 aly name=Al_scaffold_0004_3017;pid=870854;prot=eq;tid=902367 - scaffold_4 No
AL4G31120 aly name=scaffold_403255.1;pid=903754;prot=eq;tid=935267 - scaffold_4 No
AL4G31130 aly name=fgenesh1_pg.C_scaffold_4002511;pid=346169;prot=eq;tid=346169 - scaffold_4 No
AL4G31140 aly name=fgenesh2_kg.4__2529__AT2G43580.1;pid=483469;prot=eq;tid=483469 - scaffold_4 No
AL4G31150 aly name=fgenesh2_kg.4__2530__AT2G43590.1;pid=483470;prot=eq;tid=483470 - scaffold_4 No
AL4G31170 aly name=fgenesh2_kg.4__2531__AT2G43600.1;pid=483471;prot=eq;tid=483471 - scaffold_4 No
AL4G31180 aly name=fgenesh2_kg.4__2532__AT2G43610.1;pid=483472;prot=eq;tid=483472 - scaffold_4 No
AL4G31190 aly name=fgenesh2_kg.4__2533__AT2G43620.1;pid=483473;prot=eq;tid=483473 - scaffold_4 No
AL5G16280 aly name=fgenesh2_kg.5__1110__AT3G47540.1;pid=485118;prot=eq;tid=485118 + scaffold_5 No
AL5G24480 aly name=fgenesh2_kg.5__1834__AT3G54420.1;pid=485842;prot=eq;tid=485842 + scaffold_5 No
AL6G39830 aly name=scaffold_604118.1;pid=912061;prot=eq;tid=943574 + scaffold_6 No
AT1G02360 ath Chitinase family protein; FUNCTIONS IN: chitinase activity; INVOLVED IN: carbohydrate metabolic process, cell wall macromolecule catabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: stem, cotyledon, leaf whorl, root; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, family 19 (InterPro:IPR016283), Glycoside hydrolase, family 19, catalytic (InterPro:IPR000726); BEST Arabidopsis thaliana protein match is: Chitinase family protein (TAIR:AT4G01700.1); Has 2043 Blast hits to 2034 proteins in 421 species: Archae - 0; Bacteria - 465; Metazoa - 37; Fungi - 5; Plants - 1453; Viruses - 2; Other Eukaryotes - 81 (source: NCBI BLink).;Chitinase family protein transcript=eq;prot=eq; - 1 No
AT1G05850 ath Encodes an endo chitinase-like protein AtCTL1. Essential for tolerance to heat, salt and drought stresses. Also involved in root hair development, cell expansion and response to cytokinin. Allelic to erh2. 11 alleles described in Hauser (1995). Mutant is defective in acquired thermotolerance, appears semidwarf throughout its life cycle and has extra lateral branches. There are two EMS alleles. Expression of AtHSP101 is not affected in the mutants.;Chitinase family protein transcript=eq;prot=eq; - 1 No
AT1G56680 ath Chitinase family protein; FUNCTIONS IN: chitin binding, chitinase activity; INVOLVED IN: carbohydrate metabolic process, cell wall macromolecule catabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: shoot apex, sepal, root, flower; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, family 19 (InterPro:IPR016283), Chitin-binding, type 1 (InterPro:IPR001002), Glycoside hydrolase, family 19, catalytic (InterPro:IPR000726); BEST Arabidopsis thaliana protein match is: Chitinase family protein (TAIR:AT2G43600.1); Has 1945 Blast hits to 1934 proteins in 382 species: Archae - 0; Bacteria - 418; Metazoa - 15; Fungi - 16; Plants - 1444; Viruses - 3; Other Eukaryotes - 49 (source: NCBI BLink).;Chitinase family protein transcript=eq;prot=eq; - 1 No
AT2G43570 ath 'chitinase, putative' (CHI); FUNCTIONS IN: chitin binding, chitinase activity; INVOLVED IN: carbohydrate metabolic process, cell wall macromolecule catabolic process; LOCATED IN: apoplast, plant-type cell wall; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Chitin-binding, type 1, conserved site (InterPro:IPR018371), Glycoside hydrolase, family 19 (InterPro:IPR016283), Chitin-binding, type 1 (InterPro:IPR001002), Glycoside hydrolase, family 19, catalytic (InterPro:IPR000726); BEST Arabidopsis thaliana protein match is: Chitinase family protein (TAIR:AT2G43590.1); Has 2763 Blast hits to 2517 proteins in 507 species: Archae - 0; Bacteria - 569; Metazoa - 35; Fungi - 239; Plants - 1787; Viruses - 9; Other Eukaryotes - 124 (source: NCBI BLink).;chitinase, putative transcript=eq;prot=eq; - 2 No
AT2G43580 ath Chitinase family protein; FUNCTIONS IN: chitin binding, chitinase activity; INVOLVED IN: carbohydrate metabolic process, cell wall macromolecule catabolic process; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Chitin-binding, type 1, conserved site (InterPro:IPR018371), Glycoside hydrolase, family 19 (InterPro:IPR016283), Chitin-binding, type 1 (InterPro:IPR001002), Glycoside hydrolase, family 19, catalytic (InterPro:IPR000726); BEST Arabidopsis thaliana protein match is: Chitinase family protein (TAIR:AT2G43590.1); Has 2596 Blast hits to 2382 proteins in 484 species: Archae - 0; Bacteria - 530; Metazoa - 33; Fungi - 193; Plants - 1749; Viruses - 5; Other Eukaryotes - 86 (source: NCBI BLink).;Chitinase family protein transcript=eq;prot=eq; - 2 No
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