Gene family  

Sub-families
ORTHO002628 (31 genes in 19 species)
ORTHO003613 (29 genes in 18 species)
ORTHO005277 (26 genes in 16 species)
View all sub-families (29)
 
Keywords


Overview of gene family content




aly
Arabidopsis lyrata (13 genes)
ath
Arabidopsis thaliana (15 genes)
bdi
Brachypodium distachyon (8 genes)
cpa
Carica papaya (13 genes)
cre
Chlamydomonas reinhardtii (1 gene)
fve
Fragaria vesca (19 genes)
gma
Glycine max (35 genes)
lja
Lotus japonicus (20 genes)
mdo
Malus domestica (25 genes)
mes
Manihot esculenta (18 genes)
mrcc299
Micromonas sp. RCC299 (2 genes)
mtr
Medicago truncatula (9 genes)
olu
Ostreococcus lucimarinus (2 genes)
osa
Oryza sativa ssp. japonica (12 genes)
osaindica
Oryza sativa ssp. indica (17 genes)
ota
Ostreococcus tauri (1 gene)
ppa
Physcomitrella patens (6 genes)
ptr
Populus trichocarpa (22 genes)
rco
Ricinus communis (13 genes)
sbi
Sorghum bicolor (11 genes)
smo
Selaginella moellendorffii (3 genes)
tca
Theobroma cacao (17 genes)
vca
Volvox carteri (1 gene)
vvi
Vitis vinifera (15 genes)
zma
Zea mays (11 genes)



The gene family HOM000266 has 309 genes in 25 species (36 outlier genes).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
This page uses the Flash plugin.




Index of genes with 1 constraints:

Page 1 of 16, showing 20 records out of 309 total, starting on record 1, ending on 20

gene_id species description comment strand chr outlier
AL1G08070 aly name=scaffold_100868.1;pid=888074;prot=eq;tid=919587 + scaffold_1 No
AL1G08080 aly name=fgenesh1_pg.C_scaffold_1000697;pid=334132;prot=eq;tid=334132 + scaffold_1 No
AL1G19340 aly name=Al_scaffold_0001_1911;pid=880144;prot=eq;tid=911657 + scaffold_1 No
AL1G27690 aly name=Al_scaffold_0001_2714;pid=880947;prot=eq;tid=912460 - scaffold_1 No
AL2G16810 aly name=fgenesh2_kg.2__1116__AT1G68600.1;pid=475986;prot=eq;tid=475986 + scaffold_2 No
AL3G12080 aly name=fgenesh1_pm.C_scaffold_3000965;pid=317949;prot=eq;tid=317949 - scaffold_3 No
AL3G19970 aly name=scaffold_302181.1;pid=898211;prot=eq;tid=929724 + scaffold_3 No
AL3G38190 aly name=fgenesh1_pm.C_scaffold_3002712;pid=319696;prot=eq;tid=319696 - scaffold_3 No
AL4G11060 aly name=fgenesh1_pg.C_scaffold_4000822;pid=344480;prot=eq;tid=344480 + scaffold_4 No
AL6G40660 aly name=fgenesh1_pg.C_scaffold_6003333;pid=352740;prot=eq;tid=352740 + scaffold_6 No
AL7G24930 aly name=fgenesh2_kg.7__2507__AT4G17970.1;pid=493074;prot=eq;tid=493074 - scaffold_7 No
AL8G01550 aly name=fgenesh2_kg.8__133__AT5G46610.2;pid=494317;prot=eq;tid=494317 + scaffold_8 No
AL8G01560 aly name=fgenesh1_pg.C_scaffold_8000124;pid=356337;prot=eq;tid=356337 + scaffold_8 No
AT1G08430 ath Encodes a Al-activated malate efflux transporter. Is essential for aluminum tolerance but does not represent the major Al tolerance QTL. Staurosporine and calyculin A both block all changes in AtALMT1 gene expression (as a result malate release is totally inhibited).;aluminum-activated malate transporter 1 transcript=eq;prot=eq; + 1 No
AT1G08440 ath Aluminium activated malate transporter family protein; INVOLVED IN: response to aluminum ion; CONTAINS InterPro DOMAIN/s: Malate transporter, aliminium toerance (InterPro:IPR020966); BEST Arabidopsis thaliana protein match is: aluminum-activated malate transporter 1 (TAIR:AT1G08430.1); Has 610 Blast hits to 608 proteins in 146 species: Archae - 0; Bacteria - 224; Metazoa - 0; Fungi - 10; Plants - 352; Viruses - 0; Other Eukaryotes - 24 (source: NCBI BLink).;Aluminium activated malate transporter family protein transcript=eq;prot=eq; + 1 No
AT1G18420 ath Aluminium activated malate transporter family protein; INVOLVED IN: response to aluminum ion; CONTAINS InterPro DOMAIN/s: Malate transporter, aliminium toerance (InterPro:IPR020966); BEST Arabidopsis thaliana protein match is: aluminum-activated malate transporter 9 (TAIR:AT3G18440.1); Has 539 Blast hits to 535 proteins in 118 species: Archae - 0; Bacteria - 174; Metazoa - 1; Fungi - 11; Plants - 341; Viruses - 0; Other Eukaryotes - 12 (source: NCBI BLink).;Aluminium activated malate transporter family protein transcript=eq;prot=eq; + 1 No
AT1G25480 ath Aluminium activated malate transporter family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to aluminum ion; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Malate transporter, aliminium toerance (InterPro:IPR020966); BEST Arabidopsis thaliana protein match is: Aluminium activated malate transporter family protein (TAIR:AT1G68600.1); Has 866 Blast hits to 864 proteins in 262 species: Archae - 0; Bacteria - 474; Metazoa - 0; Fungi - 26; Plants - 341; Viruses - 0; Other Eukaryotes - 25 (source: NCBI BLink).;Aluminium activated malate transporter family protein transcript=eq;prot=eq; + 1 No
AT1G32520 ath unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; Has 143 Blast hits to 142 proteins in 34 species: Archae - 0; Bacteria - 0; Metazoa - 39; Fungi - 0; Plants - 56; Viruses - 0; Other Eukaryotes - 48 (source: NCBI BLink). transcript=eq;prot=eq; - 1 Yes
AT1G68600 ath Aluminium activated malate transporter family protein; INVOLVED IN: response to aluminum ion; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Malate transporter, aliminium toerance (InterPro:IPR020966); BEST Arabidopsis thaliana protein match is: Aluminium activated malate transporter family protein (TAIR:AT1G25480.1); Has 818 Blast hits to 814 proteins in 251 species: Archae - 0; Bacteria - 420; Metazoa - 0; Fungi - 36; Plants - 336; Viruses - 0; Other Eukaryotes - 26 (source: NCBI BLink).;Aluminium activated malate transporter family protein transcript=eq;prot=eq; + 1 No
AT2G17470 ath Aluminium activated malate transporter family protein; INVOLVED IN: response to aluminum ion; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Malate transporter, aliminium toerance (InterPro:IPR020966); BEST Arabidopsis thaliana protein match is: Aluminium activated malate transporter family protein (TAIR:AT1G25480.1); Has 1009 Blast hits to 1007 proteins in 362 species: Archae - 0; Bacteria - 626; Metazoa - 0; Fungi - 24; Plants - 336; Viruses - 0; Other Eukaryotes - 23 (source: NCBI BLink).;Aluminium activated malate transporter family protein transcript=eq;prot=eq; - 2 No
<< previous
1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 next >>

Download genes

Include following columns
gene_id
species
description
comment
strand
chr
outlier