Gene family  

Sub-families
ORTHO002061 (34 genes in 19 species)
ORTHO004097 (28 genes in 16 species)
ORTHO005315 (26 genes in 18 species)
View all sub-families (29)
 
Keywords


Overview of gene family content




aly
Arabidopsis lyrata (15 genes)
ath
Arabidopsis thaliana (15 genes)
bdi
Brachypodium distachyon (13 genes)
cpa
Carica papaya (11 genes)
fve
Fragaria vesca (11 genes)
gma
Glycine max (43 genes)
lja
Lotus japonicus (20 genes)
mdo
Malus domestica (25 genes)
mes
Manihot esculenta (20 genes)
mtr
Medicago truncatula (14 genes)
osa
Oryza sativa ssp. japonica (15 genes)
osaindica
Oryza sativa ssp. indica (13 genes)
ppa
Physcomitrella patens (6 genes)
ptr
Populus trichocarpa (22 genes)
rco
Ricinus communis (11 genes)
sbi
Sorghum bicolor (14 genes)
smo
Selaginella moellendorffii (4 genes)
tca
Theobroma cacao (11 genes)
vvi
Vitis vinifera (6 genes)
zma
Zea mays (21 genes)



The gene family HOM000262 has 310 genes in 20 species (4 outlier genes).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
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Index of genes with 1 constraints:

Page 1 of 16, showing 20 records out of 310 total, starting on record 1, ending on 20

gene_id species description comment strand chr outlier
AL1G15240 aly name=fgenesh2_kg.1__1577__AT1G14490.1;pid=471623;prot=eq;tid=471623 - scaffold_1 No
AL1G22100 aly name=fgenesh2_kg.1__2280__AT1G20900.1;pid=472326;prot=eq;tid=472326 + scaffold_1 No
AL2G25450 aly name=fgenesh2_kg.2__1937__AT1G76500.1;pid=476807;prot=eq;tid=476807 + scaffold_2 No
AL3G04220 aly name=fgenesh2_kg.3__414__AT3G04570.1;pid=477713;prot=eq;tid=477713 + scaffold_3 No
AL4G20630 aly name=fgenesh2_kg.4__1552__AT2G35270.1;pid=482492;prot=eq;tid=482492 + scaffold_4 No
AL4G30340 aly name=fgenesh2_kg.4__2454__AT2G42940.1;pid=483394;prot=eq;tid=483394 - scaffold_4 No
AL4G33340 aly name=scaffold_403488.1;pid=903987;prot=eq;tid=935500 + scaffold_4 No
AL5G25680 aly name=scaffold_502684.1;pid=906980;prot=eq;tid=938493 - scaffold_5 No
AL5G31580 aly name=fgenesh2_kg.5__2553__AT3G60870.1;pid=486561;prot=eq;tid=486561 + scaffold_5 No
AL6G35250 aly name=fgenesh2_kg.6__3158__AT4G12050.1;pid=490024;prot=eq;tid=490024 - scaffold_6 No
AL7G05490 aly name=fgenesh2_kg.7__541__AT4G35390.1;pid=491108;prot=eq;tid=491108 - scaffold_7 No
AL7G19410 aly name=fgenesh2_kg.7__2021__AT4G22810.1;pid=492588;prot=eq;tid=492588 - scaffold_7 No
AL7G25090 aly name=fgenesh2_kg.7__2526__AT4G17800.1;pid=493093;prot=eq;tid=493093 + scaffold_7 No
AL7G29820 aly name=fgenesh2_kg.7__2892__AT4G14465.1;pid=493459;prot=eq;tid=493459 - scaffold_7 No
AL8G13580 aly name=scaffold_801368.1;pid=917968;prot=eq;tid=949481 + scaffold_8 No
AT1G14490 ath Predicted AT-hook DNA-binding family protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF296 (InterPro:IPR005175), Predicted AT-hook DNA-binding (InterPro:IPR014476); BEST Arabidopsis thaliana protein match is: Predicted AT-hook DNA-binding family protein (TAIR:AT5G49700.1); Has 747 Blast hits to 743 proteins in 22 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 747; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).;Predicted AT-hook DNA-binding family protein transcript=eq;prot=eq; - 1 No
AT1G20900 ath Encodes an AT hook domain containing protein that acts redundantly with SOB3 to modulate hypocotyl growth inhibition in response to light.;Predicted AT-hook DNA-binding family protein transcript=eq;prot=eq; + 1 No
AT1G76500 ath Encodes an AT hook domain containing protein. Identified in a screen of activation tagged lines that suppress the long-hypocotyl phenotype of a weak phyB allele. Affects cell elongation in the hypocotyl and leaves.Acts redundantly with ESC to modulate hypocotyl growth inhibition in response to light;Predicted AT-hook DNA-binding family protein transcript=eq;prot=eq; + 1 No
AT2G35270 ath Direct target of AGAMOUS. Regulates patterning and differentiation of reproductive organs.;Predicted AT-hook DNA-binding family protein transcript=eq;prot=eq; + 2 No
AT2G42940 ath Predicted AT-hook DNA-binding family protein; FUNCTIONS IN: DNA binding; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: leaf whorl, sepal, flower; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF296 (InterPro:IPR005175), AT hook, DNA-binding motif (InterPro:IPR017956), Predicted AT-hook DNA-binding (InterPro:IPR014476); BEST Arabidopsis thaliana protein match is: Predicted AT-hook DNA-binding family protein (TAIR:AT2G35270.1); Has 767 Blast hits to 762 proteins in 28 species: Archae - 0; Bacteria - 10; Metazoa - 0; Fungi - 0; Plants - 756; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).;Predicted AT-hook DNA-binding family protein transcript=eq;prot=eq; - 2 No
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