Gene family  

Sub-families
ORTHO001440 (38 genes in 24 species)
ORTHO001685 (36 genes in 25 species)
ORTHO001784 (35 genes in 23 species)
View all sub-families (14)
 
Keywords


Overview of gene family content




aly
Arabidopsis lyrata (19 genes)
ath
Arabidopsis thaliana (11 genes)
bdi
Brachypodium distachyon (11 genes)
cpa
Carica papaya (10 genes)
cre
Chlamydomonas reinhardtii (8 genes)
fve
Fragaria vesca (8 genes)
gma
Glycine max (23 genes)
lja
Lotus japonicus (17 genes)
mdo
Malus domestica (38 genes)
mes
Manihot esculenta (13 genes)
mrcc299
Micromonas sp. RCC299 (8 genes)
mtr
Medicago truncatula (8 genes)
olu
Ostreococcus lucimarinus (10 genes)
osa
Oryza sativa ssp. japonica (12 genes)
osaindica
Oryza sativa ssp. indica (13 genes)
ota
Ostreococcus tauri (8 genes)
ppa
Physcomitrella patens (15 genes)
ptr
Populus trichocarpa (18 genes)
rco
Ricinus communis (8 genes)
sbi
Sorghum bicolor (13 genes)
smo
Selaginella moellendorffii (2 genes)
tca
Theobroma cacao (11 genes)
vca
Volvox carteri (8 genes)
vvi
Vitis vinifera (12 genes)
zma
Zea mays (14 genes)



The gene family HOM000252 has 318 genes in 25 species (29 outlier genes).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
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Index of genes with 1 constraints:

Page 1 of 16, showing 20 records out of 318 total, starting on record 1, ending on 20

gene_id species description comment strand chr outlier
AL0G11160 aly name=Al_scaffold_0881_2;pid=856331;prot=eq;tid=887844 - scaffold_881 Yes
AL0G11220 aly name=Al_scaffold_0891_2;pid=856028;prot=eq;tid=887541 - scaffold_891 Yes
AL1G24840 aly name=scaffold_102629.1;pid=889835;prot=eq;tid=921348 + scaffold_1 Yes
AL1G28140 aly name=fgenesh2_kg.1__2850__AT1G24510.1;pid=472896;prot=eq;tid=472896 + scaffold_1 No
AL2G15780 aly name=fgenesh2_kg.2__1010__AT1G67760.1;pid=475880;prot=eq;tid=475880 - scaffold_2 Yes
AL3G01700 aly name=fgenesh2_kg.3__188__AT3G02530.1;pid=477487;prot=eq;tid=477487 - scaffold_3 No
AL3G03510 aly name=fgenesh2_kg.3__352__AT3G03960.1;pid=477651;prot=eq;tid=477651 + scaffold_3 No
AL3G05960 aly name=fgenesh1_pm.C_scaffold_3000472;pid=317456;prot=eq;tid=317456 + scaffold_3 No
AL3G12230 aly name=scaffold_301356.1;pid=897386;prot=eq;tid=928899 + scaffold_3 No
AL3G19670 aly name=scaffold_302147.1;pid=898177;prot=eq;tid=929690 + scaffold_3 No
AL3G21880 aly name=fgenesh2_kg.3__2225__AT3G20050.1;pid=479524;prot=eq;tid=479524 - scaffold_3 No
AL4G00550 aly name=scaffold_400055.1;pid=900554;prot=eq;tid=932067 + scaffold_4 Yes
AL4G29350 aly name=Al_scaffold_0004_2849;pid=870686;prot=eq;tid=902199 - scaffold_4 Yes
AL5G18660 aly name=scaffold_501940.1;pid=906236;prot=eq;tid=937749 + scaffold_5 Yes
AL6G15920 aly name=Al_scaffold_0006_1513;pid=862004;prot=eq;tid=893517 - scaffold_6 No
AL6G18220 aly name=Al_scaffold_0006_1735;pid=862226;prot=eq;tid=893739 + scaffold_6 No
AL6G21180 aly name=scaffold_602187.1;pid=910130;prot=eq;tid=941643 - scaffold_6 No
AL6G26610 aly name=fgenesh2_kg.6__2609__AT5G26360.1;pid=489475;prot=eq;tid=489475 - scaffold_6 No
AL8G18370 aly name=scaffold_801849.1;pid=918449;prot=eq;tid=949962 - scaffold_8 Yes
AT1G24510 ath TCP-1/cpn60 chaperonin family protein; FUNCTIONS IN: protein binding; INVOLVED IN: protein folding, cellular protein metabolic process; LOCATED IN: plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Chaperone, tailless complex polypeptide 1 (InterPro:IPR017998), Chaperonin Cpn60/TCP-1 (InterPro:IPR002423), T-complex protein 1, epsilon subunit (InterPro:IPR012718), Chaperonin TCP-1, conserved site (InterPro:IPR002194); BEST Arabidopsis thaliana protein match is: TCP-1/cpn60 chaperonin family protein (TAIR:AT3G18190.1); Has 18150 Blast hits to 18008 proteins in 3818 species: Archae - 807; Bacteria - 8763; Metazoa - 2077; Fungi - 1503; Plants - 864; Viruses - 0; Other Eukaryotes - 4136 (source: NCBI BLink).;TCP-1/cpn60 chaperonin family protein transcript=eq;prot=eq; - 1 No
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