Gene family  

Sub-families
ORTHO001843 (35 genes in 20 species)
ORTHO002986 (30 genes in 18 species)
ORTHO004332 (27 genes in 17 species)
View all sub-families (37)
 
Keywords


Overview of gene family content




aly
Arabidopsis lyrata (14 genes)
ath
Arabidopsis thaliana (14 genes)
bdi
Brachypodium distachyon (18 genes)
cpa
Carica papaya (10 genes)
cre
Chlamydomonas reinhardtii (1 gene)
fve
Fragaria vesca (8 genes)
gma
Glycine max (34 genes)
lja
Lotus japonicus (14 genes)
mdo
Malus domestica (39 genes)
mes
Manihot esculenta (17 genes)
mrcc299
Micromonas sp. RCC299 (2 genes)
mtr
Medicago truncatula (12 genes)
osa
Oryza sativa ssp. japonica (18 genes)
osaindica
Oryza sativa ssp. indica (16 genes)
ota
Ostreococcus tauri (1 gene)
ppa
Physcomitrella patens (10 genes)
ptr
Populus trichocarpa (16 genes)
rco
Ricinus communis (11 genes)
sbi
Sorghum bicolor (20 genes)
smo
Selaginella moellendorffii (3 genes)
tca
Theobroma cacao (10 genes)
vca
Volvox carteri (1 gene)
vvi
Vitis vinifera (10 genes)
zma
Zea mays (23 genes)



The gene family HOM000249 has 322 genes in 24 species (11 outlier genes).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
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Index of genes with 1 constraints:

Page 1 of 17, showing 20 records out of 322 total, starting on record 1, ending on 20

gene_id species description comment strand chr outlier
AL1G05550 aly name=fgenesh2_kg.1__570__AT1G06040.1;pid=470616;prot=eq;tid=470616 - scaffold_1 No
AL2G24490 aly name=fgenesh2_kg.2__1831__AT1G75540.1;pid=476701;prot=eq;tid=476701 + scaffold_2 No
AL2G27620 aly name=fgenesh2_kg.2__2154__AT1G78600.1;pid=477024;prot=eq;tid=477024 + scaffold_2 No
AL3G01500 aly name=fgenesh2_kg.3__173__AT3G02380.1;pid=477472;prot=eq;tid=477472 - scaffold_3 No
AL4G00470 aly name=scaffold_400047.1;pid=900546;prot=eq;tid=932059 + scaffold_4 No
AL4G05600 aly name=fgenesh2_kg.4__399__AT2G24790.1;pid=481339;prot=eq;tid=481339 + scaffold_4 No
AL4G16290 aly name=fgenesh2_kg.4__1130__AT2G31380.1;pid=482070;prot=eq;tid=482070 + scaffold_4 No
AL6G15680 aly name=fgenesh2_kg.6__1563__AT5G15840.1;pid=488429;prot=eq;tid=488429 - scaffold_6 No
AL6G15690 aly name=fgenesh2_kg.6__1566__AT5G15850.1;pid=488432;prot=eq;tid=488432 - scaffold_6 No
AL6G25050 aly name=fgenesh2_kg.6__2487__AT5G24930.1;pid=489353;prot=eq;tid=489353 + scaffold_6 No
AL6G32540 aly name=fgenesh2_kg.6__3002__AT4G10240.1;pid=489868;prot=eq;tid=489868 - scaffold_6 No
AL7G00860 aly name=scaffold_700091.1;pid=912349;prot=eq;tid=943862 + scaffold_7 No
AL7G00980 aly name=fgenesh2_kg.7__108__AT4G39070.1;pid=490675;prot=eq;tid=490675 - scaffold_7 No
AL8G23400 aly name=fgenesh2_kg.8__1679__AT5G57660.1;pid=495863;prot=eq;tid=495863 + scaffold_8 No
AT1G06040 ath Encodes salt tolerance protein (STO) which confers salt tolerance to yeast cells. Fully complements calcineurin deficient yeast but does not encode a phosphoprotein phosphatase. Sequence has similarities to CONSTANS. STO co-localizes with COP1 and plays a role in light signaling.;B-box zinc finger family protein transcript=eq;prot=eq; - 1 No
AT1G75540 ath salt tolerance homolog2 (STH2); FUNCTIONS IN: sequence-specific DNA binding transcription factor activity, zinc ion binding; LOCATED IN: intracellular; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, B-box (InterPro:IPR000315); BEST Arabidopsis thaliana protein match is: B-box zinc finger family protein (TAIR:AT4G39070.1); Has 3177 Blast hits to 2249 proteins in 137 species: Archae - 0; Bacteria - 0; Metazoa - 20; Fungi - 43; Plants - 2068; Viruses - 0; Other Eukaryotes - 1046 (source: NCBI BLink).;salt tolerance homolog2 transcript=eq;prot=eq; + 1 No
AT1G78600 ath light-regulated zinc finger protein 1 (LZF1); CONTAINS InterPro DOMAIN/s: Zinc finger, B-box (InterPro:IPR000315); BEST Arabidopsis thaliana protein match is: B-box zinc finger family protein (TAIR:AT1G06040.1).;light-regulated zinc finger protein 1 transcript=eq;prot=eq; + 1 No
AT2G21320 ath B-box zinc finger family protein; FUNCTIONS IN: sequence-specific DNA binding transcription factor activity, zinc ion binding; INVOLVED IN: regulation of transcription; LOCATED IN: endomembrane system, intracellular; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, B-box (InterPro:IPR000315); BEST Arabidopsis thaliana protein match is: B-box type zinc finger family protein (TAIR:AT4G38960.1); Has 1943 Blast hits to 1369 proteins in 125 species: Archae - 0; Bacteria - 0; Metazoa - 26; Fungi - 0; Plants - 1819; Viruses - 0; Other Eukaryotes - 98 (source: NCBI BLink).;B-box zinc finger family protein transcript=eq;prot=eq; + 2 No
AT2G24790 ath Positive regulator of photomorphogenesis that acts downstream of COP1 but can promote lateral root development independently of COP1 and also function as a daylength-sensitive regulator of shoot branching.;CONSTANS-like 3 transcript=eq;prot=eq; + 2 No
AT2G31380 ath a B-box zinc finger protein that interacts with COP1. contains a novel 11 amino acid motif at the C-terminus (also found at the N-terminus of HY5) that is involved in the COP1 interaction.;salt tolerance homologue transcript=eq;prot=eq; + 2 No
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