Gene family  

Sub-families
ORTHO000140 (95 genes in 23 species)
ORTHO001722 (36 genes in 25 species)
ORTHO002102 (33 genes in 24 species)
View all sub-families (14)
 
Keywords


Overview of gene family content




aly
Arabidopsis lyrata (13 genes)
ath
Arabidopsis thaliana (9 genes)
bdi
Brachypodium distachyon (12 genes)
cpa
Carica papaya (7 genes)
cre
Chlamydomonas reinhardtii (7 genes)
fve
Fragaria vesca (10 genes)
gma
Glycine max (20 genes)
lja
Lotus japonicus (13 genes)
mdo
Malus domestica (33 genes)
mes
Manihot esculenta (14 genes)
mrcc299
Micromonas sp. RCC299 (6 genes)
mtr
Medicago truncatula (25 genes)
olu
Ostreococcus lucimarinus (6 genes)
osa
Oryza sativa ssp. japonica (11 genes)
osaindica
Oryza sativa ssp. indica (12 genes)
ota
Ostreococcus tauri (6 genes)
ppa
Physcomitrella patens (16 genes)
ptr
Populus trichocarpa (20 genes)
rco
Ricinus communis (13 genes)
sbi
Sorghum bicolor (11 genes)
smo
Selaginella moellendorffii (3 genes)
tca
Theobroma cacao (11 genes)
vca
Volvox carteri (8 genes)
vvi
Vitis vinifera (16 genes)
zma
Zea mays (20 genes)



The gene family HOM000248 has 322 genes in 25 species (14 outlier genes).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
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Index of genes with 1 constraints:

Page 1 of 17, showing 20 records out of 322 total, starting on record 1, ending on 20

gene_id species description comment strand chr outlier
AL1G02670 aly name=Al_scaffold_0001_253;pid=878486;prot=eq;tid=909999 - scaffold_1 No
AL1G07540 aly name=fgenesh2_kg.1__791__AT1G07930.1;pid=470837;prot=eq;tid=470837 + scaffold_1 No
AL1G07550 aly name=fgenesh1_pm.C_scaffold_1000627;pid=311847;prot=eq;tid=311847 - scaffold_1 No
AL1G18990 aly name=fgenesh2_kg.1__1976__AT1G18070.1;pid=472022;prot=eq;tid=472022 - scaffold_1 No
AL1G42730 aly name=scaffold_104526.1;pid=891732;prot=eq;tid=923245 - scaffold_1 No
AL5G23670 aly name=scaffold_502462.1;pid=906758;prot=eq;tid=938271 - scaffold_5 No
AL6G10340 aly name=fgenesh1_pm.C_scaffold_6000823;pid=325603;prot=eq;tid=325603 + scaffold_6 No
AL6G35360 aly name=Al_scaffold_0006_3423;pid=863914;prot=eq;tid=895427 - scaffold_6 No
AL6G38310 aly name=fgenesh2_kg.6__3400__AT4G02930.1;pid=490266;prot=eq;tid=490266 + scaffold_6 No
AL7G22100 aly name=scaffold_702364.1;pid=914622;prot=eq;tid=946135 - scaffold_7 No
AL7G35280 aly name=Al_scaffold_0007_3410;pid=859911;prot=eq;tid=891424 + scaffold_7 No
AL8G04910 aly name=scaffold_800530.1;pid=917130;prot=eq;tid=948643 + scaffold_8 No
AL8G26590 aly name=fgenesh2_kg.8__1993__AT5G60390.1;pid=496177;prot=eq;tid=496177 + scaffold_8 No
AT1G07920 ath GTP binding Elongation factor Tu family protein; FUNCTIONS IN: calmodulin binding, translation elongation factor activity; INVOLVED IN: response to cadmium ion; LOCATED IN: mitochondrion, nucleolus, plasma membrane, chloroplast, membrane; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: seedling growth; CONTAINS InterPro DOMAIN/s: Translation elongation factor EFTu/EF1A, C-terminal (InterPro:IPR004160), Translation elongation factor EFTu/EF1A, domain 2 (InterPro:IPR004161), Translation elongation factor EF1A/initiation factor IF2gamma, C-terminal (InterPro:IPR009001), Protein synthesis factor, GTP-binding (InterPro:IPR000795), Translation elongation factor EF1A, eukaryotic/archaeal (InterPro:IPR004539), Translation elongation/initiation factor/Ribosomal, beta-barrel (InterPro:IPR009000); BEST Arabidopsis thaliana protein match is: GTP binding Elongation factor Tu family protein (TAIR:AT5G60390.3); Has 84282 Blast hits to 84186 proteins in 18729 species: Archae - 1011; Bacteria - 33710; Metazoa - 21823; Fungi - 13003; Plants - 1919; Viruses - 6; Other Eukaryotes - 12810 (source: NCBI BLink).;GTP binding Elongation factor Tu family protein transcript=eq;prot=eq; + 1 No
AT1G07930 ath GTP binding Elongation factor Tu family protein; FUNCTIONS IN: calmodulin binding, translation elongation factor activity; INVOLVED IN: translational elongation; LOCATED IN: mitochondrion, vacuole; EXPRESSED IN: cotyledon, male gametophyte, guard cell, juvenile leaf, leaf; EXPRESSED DURING: seedling growth; CONTAINS InterPro DOMAIN/s: Translation elongation factor EFTu/EF1A, C-terminal (InterPro:IPR004160), Translation elongation factor EFTu/EF1A, domain 2 (InterPro:IPR004161), Translation elongation factor EF1A/initiation factor IF2gamma, C-terminal (InterPro:IPR009001), Protein synthesis factor, GTP-binding (InterPro:IPR000795), Translation elongation factor EF1A, eukaryotic/archaeal (InterPro:IPR004539), Translation elongation/initiation factor/Ribosomal, beta-barrel (InterPro:IPR009000); BEST Arabidopsis thaliana protein match is: GTP binding Elongation factor Tu family protein (TAIR:AT5G60390.3); Has 84282 Blast hits to 84186 proteins in 18729 species: Archae - 1011; Bacteria - 33710; Metazoa - 21823; Fungi - 13003; Plants - 1919; Viruses - 6; Other Eukaryotes - 12810 (source: NCBI BLink).;GTP binding Elongation factor Tu family protein transcript=eq;prot=eq; + 1 No
AT1G07940 ath GTP binding Elongation factor Tu family protein; FUNCTIONS IN: calmodulin binding, translation elongation factor activity; INVOLVED IN: translational elongation; LOCATED IN: mitochondrion, plasma membrane; EXPRESSED IN: guard cell, juvenile leaf, leaf; EXPRESSED DURING: seedling growth; CONTAINS InterPro DOMAIN/s: Translation elongation factor EFTu/EF1A, C-terminal (InterPro:IPR004160), Translation elongation factor EFTu/EF1A, domain 2 (InterPro:IPR004161), Translation elongation factor EF1A/initiation factor IF2gamma, C-terminal (InterPro:IPR009001), Protein synthesis factor, GTP-binding (InterPro:IPR000795), Translation elongation/initiation factor/Ribosomal, beta-barrel (InterPro:IPR009000), Translation elongation factor EF1A, eukaryotic/archaeal (InterPro:IPR004539); BEST Arabidopsis thaliana protein match is: GTP binding Elongation factor Tu family protein (TAIR:AT5G60390.3); Has 84282 Blast hits to 84186 proteins in 18729 species: Archae - 1011; Bacteria - 33710; Metazoa - 21823; Fungi - 13003; Plants - 1919; Viruses - 6; Other Eukaryotes - 12810 (source: NCBI BLink).;GTP binding Elongation factor Tu family protein transcript=eq;prot=eq; - 1 No
AT1G18070 ath Translation elongation factor EF1A/initiation factor IF2gamma family protein; FUNCTIONS IN: translation factor activity, nucleic acid binding, GTP binding, GTPase activity; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Translation elongation factor EFTu/EF1A, C-terminal (InterPro:IPR004160), Translation elongation factor EFTu/EF1A, domain 2 (InterPro:IPR004161), Translation elongation factor EF1A/initiation factor IF2gamma, C-terminal (InterPro:IPR009001), Protein synthesis factor, GTP-binding (InterPro:IPR000795), Translation elongation/initiation factor/Ribosomal, beta-barrel (InterPro:IPR009000); BEST Arabidopsis thaliana protein match is: GTP binding Elongation factor Tu family protein (TAIR:AT5G60390.3).;Translation elongation factor EF1A/initiation factor IF2gamma family protein transcript=eq;prot=eq; - 1 No
AT1G35550 ath elongation factor Tu C-terminal domain-containing protein; FUNCTIONS IN: GTP binding, translation elongation factor activity; INVOLVED IN: translational elongation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Translation elongation factor EFTu/EF1A, C-terminal (InterPro:IPR004160), Translation elongation factor EF1A/initiation factor IF2gamma, C-terminal (InterPro:IPR009001); BEST Arabidopsis thaliana protein match is: GTP binding Elongation factor Tu family protein (TAIR:AT5G60390.3); Has 14582 Blast hits to 14579 proteins in 8354 species: Archae - 286; Bacteria - 0; Metazoa - 9702; Fungi - 2891; Plants - 516; Viruses - 0; Other Eukaryotes - 1187 (source: NCBI BLink).;elongation factor Tu C-terminal domain-containing protein transcript=eq;prot=eq; + 1 No
AT4G02930 ath GTP binding Elongation factor Tu family protein; FUNCTIONS IN: translation elongation factor activity, cobalt ion binding, zinc ion binding, ATP binding; INVOLVED IN: response to cadmium ion; LOCATED IN: mitochondrion, cell wall; EXPRESSED IN: 27 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Translation elongation factor EFTu/EF1A, bacterial/organelle (InterPro:IPR004541), Translation elongation factor EFTu/EF1A, C-terminal (InterPro:IPR004160), Small GTP-binding protein (InterPro:IPR005225), Translation elongation factor EFTu/EF1A, domain 2 (InterPro:IPR004161), Translation elongation factor EF1A/initiation factor IF2gamma, C-terminal (InterPro:IPR009001), Protein synthesis factor, GTP-binding (InterPro:IPR000795), Translation elongation/initiation factor/Ribosomal, beta-barrel (InterPro:IPR009000); BEST Arabidopsis thaliana protein match is: RAB GTPase homolog E1B (TAIR:AT4G20360.1); Has 89361 Blast hits to 89296 proteins in 17600 species: Archae - 1195; Bacteria - 40691; Metazoa - 19476; Fungi - 9897; Plants - 2075; Viruses - 6; Other Eukaryotes - 16021 (source: NCBI BLink).;GTP binding Elongation factor Tu family protein transcript=eq;prot=eq; - 4 No
AT4G20360 ath RAB GTPase homolog E1B (RABE1b); FUNCTIONS IN: GTP binding, translation elongation factor activity, GTPase activity; INVOLVED IN: peptidyl-cysteine S-nitrosylation; LOCATED IN: in 9 components; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Translation elongation factor EFTu/EF1A, bacterial/organelle (InterPro:IPR004541), Translation elongation factor EFTu/EF1A, C-terminal (InterPro:IPR004160), Small GTP-binding protein (InterPro:IPR005225), Translation elongation factor EFTu/EF1A, domain 2 (InterPro:IPR004161), Translation elongation factor EF1A/initiation factor IF2gamma, C-terminal (InterPro:IPR009001), Protein synthesis factor, GTP-binding (InterPro:IPR000795), Translation elongation/initiation factor/Ribosomal, beta-barrel (InterPro:IPR009000); BEST Arabidopsis thaliana protein match is: GTP binding Elongation factor Tu family protein (TAIR:AT4G02930.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).;RAB GTPase homolog E1B transcript=eq;prot=eq; + 4 No
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