Gene family  

Sub-families
ORTHO000477 (57 genes in 18 species)
ORTHO009764 (20 genes in 11 species)
ORTHO018802 (6 genes in 6 species)
View all sub-families (5)
 
Keywords


Overview of gene family content




aly
Arabidopsis lyrata (18 genes)
ath
Arabidopsis thaliana (19 genes)
bdi
Brachypodium distachyon (10 genes)
cpa
Carica papaya (14 genes)
fve
Fragaria vesca (15 genes)
gma
Glycine max (33 genes)
lja
Lotus japonicus (22 genes)
mdo
Malus domestica (36 genes)
mes
Manihot esculenta (21 genes)
mtr
Medicago truncatula (20 genes)
osa
Oryza sativa ssp. japonica (11 genes)
osaindica
Oryza sativa ssp. indica (11 genes)
ppa
Physcomitrella patens (2 genes)
ptr
Populus trichocarpa (20 genes)
rco
Ricinus communis (12 genes)
sbi
Sorghum bicolor (11 genes)
smo
Selaginella moellendorffii (4 genes)
tca
Theobroma cacao (15 genes)
vvi
Vitis vinifera (15 genes)
zma
Zea mays (17 genes)



The gene family HOM000244 has 326 genes in 20 species (5 outlier genes).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
This page uses the Flash plugin.




Index of genes with 1 constraints:

Page 1 of 17, showing 20 records out of 326 total, starting on record 1, ending on 20

gene_id species description comment strand chr outlier
AL1G23120 aly name=fgenesh1_pm.C_scaffold_1001857;pid=313077;prot=eq;tid=313077 - scaffold_1 No
AL1G50180 aly name=fgenesh2_kg.1__4571__AT1G55560.1;pid=474617;prot=eq;tid=474617 - scaffold_1 No
AL1G50190 aly name=scaffold_105351.1;pid=892557;prot=eq;tid=924070 + scaffold_1 No
AL2G09830 aly name=fgenesh2_kg.2__673__AT1G41830.1;pid=475543;prot=eq;tid=475543 - scaffold_2 No
AL2G24700 aly name=fgenesh2_kg.2__1856__AT1G75790.1;pid=476726;prot=eq;tid=476726 - scaffold_2 No
AL2G25050 aly name=scaffold_202568.1;pid=895494;prot=eq;tid=927007 - scaffold_2 No
AL3G13910 aly name=fgenesh2_kg.3__1421__AT3G13390.1;pid=478720;prot=eq;tid=478720 - scaffold_3 No
AL3G13920 aly name=fgenesh2_kg.3__1422__AT3G13400.1;pid=478721;prot=eq;tid=478721 + scaffold_3 No
AL4G03390 aly name=fgenesh1_pm.C_scaffold_4000237;pid=320180;prot=eq;tid=320180 - scaffold_4 No
AL6G35680 aly name=scaffold_603692.1;pid=911635;prot=eq;tid=943148 - scaffold_6 No
AL7G00280 aly name=fgenesh2_kg.7__37__AT4G38420.1;pid=490604;prot=eq;tid=490604 + scaffold_7 No
AL7G03760 aly name=fgenesh2_kg.7__366__AT4G37160.1;pid=490933;prot=eq;tid=490933 - scaffold_7 No
AL7G13740 aly name=fgenesh1_pm.C_scaffold_7001110;pid=328883;prot=eq;tid=328883 + scaffold_7 No
AL7G16880 aly name=fgenesh2_kg.7__1740__AT4G25240.1;pid=492307;prot=eq;tid=492307 - scaffold_7 No
AL7G20370 aly name=scaffold_702175.1;pid=914433;prot=eq;tid=945946 - scaffold_7 No
AL8G11270 aly name=Al_scaffold_0008_1090;pid=884826;prot=eq;tid=916339 - scaffold_8 No
AL8G15710 aly name=scaffold_801582.1;pid=918182;prot=eq;tid=949695 + scaffold_8 No
AL8G33650 aly name=Al_scaffold_0008_3230;pid=886966;prot=eq;tid=918479 - scaffold_8 No
AT1G21850 ath SKU5 similar 8 (sks8); FUNCTIONS IN: oxidoreductase activity, copper ion binding; INVOLVED IN: oxidation reduction; LOCATED IN: endomembrane system; EXPRESSED IN: embryo; EXPRESSED DURING: C globular stage; CONTAINS InterPro DOMAIN/s: Multicopper oxidase, type 3 (InterPro:IPR011707), Cupredoxin (InterPro:IPR008972), Multicopper oxidase, type 2 (InterPro:IPR011706), Multicopper oxidase, type 1 (InterPro:IPR001117); BEST Arabidopsis thaliana protein match is: SKU5 similar 7 (TAIR:AT1G21860.1); Has 5145 Blast hits to 5091 proteins in 951 species: Archae - 16; Bacteria - 1604; Metazoa - 263; Fungi - 1857; Plants - 1262; Viruses - 0; Other Eukaryotes - 143 (source: NCBI BLink).;SKU5 similar 8 transcript=eq;prot=eq; - 1 No
AT1G21860 ath SKU5 similar 7 (sks7); FUNCTIONS IN: oxidoreductase activity, copper ion binding; INVOLVED IN: oxidation reduction; LOCATED IN: plant-type cell wall; EXPRESSED IN: stem; CONTAINS InterPro DOMAIN/s: Multicopper oxidase, type 3 (InterPro:IPR011707), Cupredoxin (InterPro:IPR008972), Multicopper oxidase, type 2 (InterPro:IPR011706), Multicopper oxidase, type 1 (InterPro:IPR001117); BEST Arabidopsis thaliana protein match is: SKU5 similar 8 (TAIR:AT1G21850.1); Has 5059 Blast hits to 4986 proteins in 916 species: Archae - 16; Bacteria - 1499; Metazoa - 256; Fungi - 1883; Plants - 1282; Viruses - 0; Other Eukaryotes - 123 (source: NCBI BLink).;SKU5 similar 7 transcript=eq;prot=eq; - 1 No
<< previous
1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 next >>

Download genes

Include following columns
gene_id
species
description
comment
strand
chr
outlier